Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone18ag0465 ATGACGGAAAAAGCGAGGATCCAATTTTCTCGCCGCTCTGTAAGTCACTGCACTGAATCTTCTACTACTAGAAATGCATATAAAGGAATCGGCATACCTCTAGCGAGTGTTGTAATTGATTCTCAGCTCTTAAGATCGGGAAAAAATACCTTTCAAGAAGAAAAGAAGAAAATGCCGGTCAATAGAATCGCAGTCGGCACGCCAGGGGAGGCGAGCCATCCCGAAGCGATCAGAGCTATGTTCGCAGAGTTCTTCTCGACGTTGATTTTTGTTTTCGCTGGACAAGGATCCGGAATGGCTGTCAGTAAGCTAACGGACGGAGTATCAACACCGTCGGGATTGATAGCAGCTTCACTGTCTCACGCGTTCGCATTGATAGTCGCTGTCTCCGCCGGAGCAAACATTTCCGGCGGTCACGTAAATCCGGCCGTCACAATGGGAGCGTTCATCGGCGGAAACATAACCTTGCTGAGAGCGATTCTGTACTGGATCGGTCAATTGCTTGGCTCTGTTGTTGCTTGCATGCTACTCAAATTCGCAACTGGTGGATTGGTAACGACGGCGTTTGGGCTATCATCAGGAGTATCAGTATGGAACGCAGTGGTATTTGAGATAGTGATGACGTTCGGGCTGGTATACACCGTGTATGCAACGGCGGTAGATCCAAAGAAGGGCAATGTGGGAATTGTCGCGCCTATTGCAATTGGGCTTATTGTGGGTGCTAACATTTTAGTGGGCGGGGCTTTTGACGGTGCATCTATGAACCCAGCAGTAGCTTTTGGGCCTGCAGTGATCAGCTGGACTTGGACTAATCATTGGGTCTACTGGCTAGGCCCAATGCTCGGTGCTATCATTGCAGGCCTTATTTATGACAATATCTTCATTTCCGAAGGCCATGAGGCTCTACCTCAAAATGATTTTTAG 924 48.38 MTEKARIQFSRRSVSHCTESSTTRNAYKGIGIPLASVVIDSQLLRSGKNTFQEEKKKMPVNRIAVGTPGEASHPEAIRAMFAEFFSTLIFVFAGQGSGMAVSKLTDGVSTPSGLIAASLSHAFALIVAVSAGANISGGHVNPAVTMGAFIGGNITLLRAILYWIGQLLGSVVACMLLKFATGGLVTTAFGLSSGVSVWNAVVFEIVMTFGLVYTVYATAVDPKKGNVGIVAPIAIGLIVGANILVGGAFDGASMNPAVAFGPAVISWTWTNHWVYWLGPMLGAIIAGLIYDNIFISEGHEALPQNDF 307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 2246575 2247941 - Conep18aG0047800.1 Cone18ag0465 457426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone18ag0465 307 ProSitePatterns MIP family signature. 139 147 IPR022357 -
Cone18ag0465 307 FunFam Probable aquaporin TIP1-1 61 306 - -
Cone18ag0465 307 CDD MIP 78 293 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone18ag0465 307 Pfam Major intrinsic protein 71 290 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone18ag0465 307 Gene3D Glycerol uptake facilitator protein. 61 307 IPR023271 -
Cone18ag0465 307 PANTHER AQUAPORIN-8 61 301 IPR034294 GO:0006833(PANTHER)|GO:0015250(PANTHER)|GO:0016020(PANTHER)
Cone18ag0465 307 PRINTS Major intrinsic protein family signature 273 293 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone18ag0465 307 PRINTS Major intrinsic protein family signature 158 177 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone18ag0465 307 PRINTS Major intrinsic protein family signature 236 258 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone18ag0465 307 PRINTS Major intrinsic protein family signature 121 145 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone18ag0465 307 PRINTS Major intrinsic protein family signature 78 97 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone18ag0465 307 PRINTS Major intrinsic protein family signature 203 221 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone18ag0465 307 SUPERFAMILY Aquaporin-like 72 297 IPR023271 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone18ag0465 Cone-Chr18:2246575 Cone19ag0307 Cone-Chr19:2341700 4.36E-93 dispersed
Cone11ag1115 Cone-Chr11:8673968 Cone18ag0465 Cone-Chr18:2246575 8.61E-52 transposed
Cone1ag0665 Cone-Chr1:6272582 Cone18ag0465 Cone-Chr18:2246575 4.79E-129 wgd
Cone11ag1114 Cone-Chr11:8673417 Cone18ag0465 Cone-Chr18:2246575 7.30E-46 wgd
Cone18ag0465 Cone-Chr18:2246575 Cone3ag0242 Cone-Chr3:1297684 1.70E-130 wgd
Cone18ag0465 Cone-Chr18:2246575 Cone5ag1177 Cone-Chr5:5280620 8.61E-124 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone18ag0465 K09873 - mdm:103406338 420.239