Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone18ag0478 ATGGCGTTGCTACCTTACGCCCACGTCCATTCGAGCTTACGAGCTCTCGCCGGTCAGGCCGAGGGTTTCGACCGATTCGCCATTGGAGGTCTTCATGGAGCGATATATTTCGTCACCTCTTTGGCAGATGATGGTCCTGGATATCTTCGTGAAGGATGCCGCCGGAAAGAACCGCTTTGGATTGTGTTCAAAATTTCTGGCACAATTGATCTCTCATCATACTTAAATGTGTCATCTTACAAGACAGTAGATGGTAGGGGTCAAAGAATAAAGCTCAAAGGGAAAGGCTTAAGATTGAAGGAGTGTGAACATGTGATTATATGCGACCTTGAGTTTGAGGGTGGAAGAGGCCATGACGTTGATGGGATCCAAATTATACTGAATTCTAAGTACATTTGGATTGACCGTTGTAACCTTCGTGATTATGATGATGGGCTTATTGATATCACCCATCAAAATAGATGTTACTTTGCACAACATGATAAGACAATGCTTATTGGAGCAGACTCATCTCACATAGGTGATAGATGCGTTCGTGTGACAATTCACCATTGTTTCTTTGATGGGACCCGGCAAAGACACCCTCGTGTTAGATTTGGGAAAGTTCATCCGTATAACAATTACACAAGAAACTGGACTTTATACGCTATCTGTGCCAGTGTCGAGTCCCAGGTATATGATGCTCTGTCTCTTGATAGGCTTTTAAAGCATTTTGCATCAAAAGTTTTTCCAGGAAACTCAATTATTGAAATCTATTCTGATTGTTACTTTTATCTTCAATCAGATATAGATGAAGAGAAGTCTGGCCTAATAAGATCCGAGGGTGACTTACTTTTAAATGGAGCTCAGTCATGTCCATTAAAAGAAGCTGTTGGAGAGTGCATGTTTCATCCAACTGAATTCTACCCGACATGGACTATGGAAACTGCCTTAGACTCACTTAAATGCGTTCTACAAGTTTGTATGGGCTGGTGA 975 41.95 MALLPYAHVHSSLRALAGQAEGFDRFAIGGLHGAIYFVTSLADDGPGYLREGCRRKEPLWIVFKISGTIDLSSYLNVSSYKTVDGRGQRIKLKGKGLRLKECEHVIICDLEFEGGRGHDVDGIQIILNSKYIWIDRCNLRDYDDGLIDITHQNRCYFAQHDKTMLIGADSSHIGDRCVRVTIHHCFFDGTRQRHPRVRFGKVHPYNNYTRNWTLYAICASVESQVYDALSLDRLLKHFASKVFPGNSIIEIYSDCYFYLQSDIDEEKSGLIRSEGDLLLNGAQSCPLKEAVGECMFHPTEFYPTWTMETALDSLKCVLQVCMGW 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 2312634 2314306 + Conep18aG0049100.1 Cone18ag0478 457439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone18ag0478 324 Gene3D - 6 313 IPR012334 -
Cone18ag0478 324 PANTHER PECTATE LYASE 18-RELATED 11 288 IPR045032 GO:0030570(InterPro)
Cone18ag0478 324 SMART amb_all 31 232 IPR002022 -
Cone18ag0478 324 Pfam Pectate lyase 75 220 IPR002022 -
Cone18ag0478 324 PRINTS Pollen allergen Amb family signature 74 90 IPR018082 -
Cone18ag0478 324 PRINTS Pollen allergen Amb family signature 19 36 IPR018082 -
Cone18ag0478 324 SUPERFAMILY Pectin lyase-like 17 285 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag1100 Cone-Chr11:8571623 Cone18ag0478 Cone-Chr18:2312634 7.43E-195 wgd
Cone18ag0478 Cone-Chr18:2312634 Cone3ag0312 Cone-Chr3:1590028 2.61E-150 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone18ag0478 K01728 - vvi:100246761 466.077