Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone18ag0502 ATGGGGAAGAAAGGTGGCTGGTTTTCTGCAGTGAAGAAAGCTCTTAATCCGGAAACAAATGGGAAGAAAGATCAGAAAACTGACAAACCAAGGAAGAAATGGTTTGGAAAGAGCAAGAAATCCGGCGTGACATCATTATCAGATCAAAGTCCTCTTCCTATAGAAGATCCAAAACTAATAGAAGCGGAAAATGAACAGAGCAAGCATGCTTACTCTGTGGCACTTGCCACGGCAGCGGCAGCAGAGGCAGCTGTGGCAGCAGCTCAGGCGGCAGCCGAGGTTGTCCGTCTCACCACTGTTCCTCAGTATCTTGGAAAGTCAAAGGAGGAAATAGCAGCCATTGTAATTCAGACAGCATTCCGTGGATATTTGGCAAGGAGGGCTTTAAGGGCACTAAGAGGATTGGTTCGGTTAAAATCACTGCTACATGGGCAATACGTTAGACGACAGGCAGCTAGCACATTAAAATGTATGCAAACCCTTGCTCGGTTACAGTTAGAGGTCCGTACAAGGAGGATTAGAATGTCTGAGGAGAACCGCGCTCTTCAACAGCATCTCGAACAAAAACGTGATAAAGAACTCGAAAAGTTCAAAGCTTATTTGGCAGAAGAATGGGATGATAGCATGAAATCGAAGGAGGAAGTTGAAGCAAAGCAACAGAATAGGCTTGAAGCAGCTGTGAGAAGAGAGAGAGCTTTGGCTTATGCGTTTTCTCATCAAGTACTACCTAAATTATTCCCTCAAATGCTGAAGAACTCGTCAAGATCAACAAACCCAACGTTCATGGACCCGAACAATCCGCACTGGGGATGGAGCTGGTTAGAGCGTTGGATGGCAGGCCGCCCTTGGGAAGAAACTAAATCATCCGCCGCTGATTTCCACGATCACACCTCGATCAAGAGCACCACATCACTCGGAGAAATCAACCGAGCTTATGCTAATAACAAGAAGCCTTCCCCAAGAAGCCCTACTAGTAAAAACCCTATCCGGGCTCCTTCAACTCCTTCCAGGGCACCATCTTCATTTTCCGGGGGTAGAAAAATAAAATCAGCCAGCCCTAAGGTGAGTGGTTGGGGTGGGGTCCATGGTGACGAGGACTCTAGGAGTATACTAAGTGTTAGGTCAGAGTATCATCGGAGGCATAGCATTGCTGGGTCATCGGTTCGGGACGATGATAGTCTTACAAGCTTGCAATCTGTTCCGAGCTATATGGCCCCCACAACGGCTGCTAAGGCCCGGTCGAGGTTATCAAGCCCATCAAGAATGGAAAAGGGGTCGATGGGTAGTGCAAAGAAGCGGCTTTCATTCACCGGTTCTCCAGTTCCTCCGAGGAGGCGGCATTCGGGGCCTCCAGCTGTTGATGCTGGCTCGATCAAAGCCTTTGGCGGGACCCGCACAGAGGACAAACTTGGTATTAACTTGGGAAGGTAG 1431 48.43 MGKKGGWFSAVKKALNPETNGKKDQKTDKPRKKWFGKSKKSGVTSLSDQSPLPIEDPKLIEAENEQSKHAYSVALATAAAAEAAVAAAQAAAEVVRLTTVPQYLGKSKEEIAAIVIQTAFRGYLARRALRALRGLVRLKSLLHGQYVRRQAASTLKCMQTLARLQLEVRTRRIRMSEENRALQQHLEQKRDKELEKFKAYLAEEWDDSMKSKEEVEAKQQNRLEAAVRRERALAYAFSHQVLPKLFPQMLKNSSRSTNPTFMDPNNPHWGWSWLERWMAGRPWEETKSSAADFHDHTSIKSTTSLGEINRAYANNKKPSPRSPTSKNPIRAPSTPSRAPSSFSGGRKIKSASPKVSGWGGVHGDEDSRSILSVRSEYHRRHSIAGSSVRDDDSLTSLQSVPSYMAPTTAAKARSRLSSPSRMEKGSMGSAKKRLSFTGSPVPPRRRHSGPPAVDAGSIKAFGGTRTEDKLGINLGR 476
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 2449046 2452648 - Conep18aG0051500.1 Cone18ag0502 457463

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone18ag0502 476 MobiDBLite consensus disorder prediction 304 347 - -
Cone18ag0502 476 Gene3D iswi atpase 104 133 - -
Cone18ag0502 476 PANTHER IQ-DOMAIN 5-RELATED 4 426 - -
Cone18ag0502 476 MobiDBLite consensus disorder prediction 1 52 - -
Cone18ag0502 476 Coils Coil 172 195 - -
Cone18ag0502 476 MobiDBLite consensus disorder prediction 17 31 - -
Cone18ag0502 476 MobiDBLite consensus disorder prediction 405 424 - -
Cone18ag0502 476 ProSiteProfiles IQ motif profile. 109 137 - -
Cone18ag0502 476 MobiDBLite consensus disorder prediction 405 476 - -
Cone18ag0502 476 MobiDBLite consensus disorder prediction 304 366 - -
Cone18ag0502 476 SMART iq_5 108 130 IPR000048 GO:0005515(InterPro)
Cone18ag0502 476 Pfam IQ calmodulin-binding motif 112 130 IPR000048 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone18ag0502 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0521 Cone-Chr11:2740499 Cone18ag0502 Cone-Chr18:2449046 3.61E-26 dispersed
Cone18ag0502 Cone-Chr18:2449046 Cone1ag0388 Cone-Chr1:3380608 8.30E-32 dispersed
Cone5ag1030 Cone-Chr5:4492038 Cone18ag0502 Cone-Chr18:2449046 5.24E-08 dispersed
Cone13ag1287 Cone-Chr13:9640477 Cone18ag0502 Cone-Chr18:2449046 1.07E-109 wgd
Cone18ag0502 Cone-Chr18:2449046 Cone19ag1272 Cone-Chr19:8667105 7.27E-114 wgd
Cone18ag0502 Cone-Chr18:2449046 Cone5ag0328 Cone-Chr5:1384439 2.71E-106 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi13g474 . Blo13g00915 . Bda15g00176 . . . Bma08g01144 . Cmo04g01429 Cma04g01355 Cma18g00883 Car04g01432 Car18g00808 . Cpe13g00819 Cpe09g00427 . . . . . . . Cla05g02129 Cam05g2284 Cec05g2305 . . . Cre05g2265 . Cone5ag0328 . Cone18ag0502 Lsi02g01698 . Chy10g01339 Cme10g00057 Blo13g00730 . . . Bpe04g01873 . . Bma08g00947 . Cmo04g02721 Cmo15g00445 Cma04g02600 Cma15g00434 Car04g02506 Car15g00406 Cpe01g01224 Cpe01g02257 . . . . . . . . . . . . . . Lsi04g00055 Csa05g01776 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone5ag0328 . 91 268 IQD Protein Family AT3G09710 53.7 1.9e-48 191.0
Cone18ag0502 . 1 459 IQD Protein Family AT3G52290 53.2 6.7e-93 338.6
Cone5ag0328 . 73 293 IQD Protein Family AT2G26410 52.0 6.2e-48 189.5
Cone18ag0162 . 1 392 IQD Protein Family AT3G22190 59.9 3.4e-97 352.8
Cone11ag1428 . 1 385 IQD Protein Family AT3G22190 59.1 7.3e-92 335.1
Cone1ag0388 . 1 397 IQD Protein Family AT3G22190 53.0 1.4e-90 330.9
Cone5ag1312 . 1 397 IQD Protein Family AT3G22190 51.6 2.3e-85 313.5
Cone4ag1669 . 2 415 IQD Protein Family AT2G26180 57.2 2.9e-101 366.3
Cone20ag0275 . 4 391 IQD Protein Family AT2G26180 58.8 2.5e-100 363.2
Cone17ag0933 . 4 391 IQD Protein Family AT2G26180 57.0 7.5e-97 351.7
Cone14ag1038 . 44 231 IQD Protein Family AT2G33990 54.5 1.3e-43 174.1
Cone14ag1038 . 19 228 IQD Protein Family AT3G15050 55.2 2.3e-51 199.9
Cone15ag1024 . 36 229 IQD Protein Family AT3G15050 56.2 5.0e-51 198.7
Cone18ag0985 . 1 527 IQD Protein Family AT4G00820 50.4 4.6e-115 412.5
Cone4ag0762 . 1 383 IQD Protein Family AT3G16490 50.3 3.0e-63 240.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005280 2 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 6 1 0 40