Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone18ag0517 ATGGCTAAGGACTCAGGAGTGGCGGAGCAGGGTTCCTTCAACTCCAAGGACTACCACGACCCGCCTCCGGCGCCGCTCATCGACGGGGAAGAGCTGACTCGCTGGTCCTTCTACCGTGCCTTAATCGCCGAGTTCATCGCCACTCTTCTTTTCCTCTACATAACTGTCCTAACCGTGATTGGCTACAAAAGTCAAACTGATCACGCTGACCCTTGTGGTGGGGTCGGCGTTCTCGGCATCGCTTGGGCCTTTGGTGGCATGATCTTCGTCCTCGTCTACTGCACTGCTGGCATTTCCGGTGGTCATATTAACCCAGCAGTGACGTTTGGGCTGTTTTTGGCCCGTAAGGTGTCACTCGTCCGAGCCGTGTTGTACATGGTGGCTCAGTGCTTAGGAGCCATATGTGGAGTTGGGTTAGTCAAGGCCTTCCAGAAGGCCTACTTTGATAGATACGGTGGTGGGGCCAACGAGCTCCAGTCTGGCTACAGCAAAGGCACTGGATTGGGCGCTGAGATCATCGGAACCTTCGTTCTGGTCTACACCGTCTTCTCCGCCACTGATCCTAAAAGGAGTGCCCGAGATTCCCATGTTCCTGTATTGGCTCCGCTTCCGATTGGATTTGCAGTGTTTATAGTTCACTTGGCAACCATTCCTATTACCGGGACTGGTATCAACCCTGCTAGGAGTCTGGGATCTGCCCTTATTTACAACAAGGACAAAGCTTGGGATGACCTTTGGATATTCTGGGTGGGACCTTTTATTGGAGCAGCCATTGCAGCTTTCTACCATCAATTTGTATTGAGAGCCGGTGCTGTTAAAGCTCTTGGGTCGTTCAGGAGCAACCCTAGTGTGTAG 855 52.75 MAKDSGVAEQGSFNSKDYHDPPPAPLIDGEELTRWSFYRALIAEFIATLLFLYITVLTVIGYKSQTDHADPCGGVGVLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVLYMVAQCLGAICGVGLVKAFQKAYFDRYGGGANELQSGYSKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFIVHLATIPITGTGINPARSLGSALIYNKDKAWDDLWIFWVGPFIGAAIAAFYHQFVLRAGAVKALGSFRSNPSV 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 2534956 2537199 - Conep18aG0053100.1 Cone18ag0517 457478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone18ag0517 284 CDD MIP 39 266 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone18ag0517 284 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone18ag0517 284 PRINTS Major intrinsic protein family signature 84 108 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone18ag0517 284 PRINTS Major intrinsic protein family signature 121 140 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone18ag0517 284 PRINTS Major intrinsic protein family signature 246 266 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone18ag0517 284 PRINTS Major intrinsic protein family signature 170 188 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone18ag0517 284 PRINTS Major intrinsic protein family signature 206 228 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone18ag0517 284 Pfam Major intrinsic protein 31 263 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone18ag0517 284 NCBIfam MIP family channel protein 43 263 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone18ag0517 284 ProSitePatterns MIP family signature. 102 110 IPR022357 -
Cone18ag0517 284 FunFam Probable aquaporin PIP1-2 24 282 - -
Cone18ag0517 284 SUPERFAMILY Aquaporin-like 31 268 IPR023271 -
Cone18ag0517 284 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 7 280 IPR034294 GO:0005886(PANTHER)|GO:0015250(PANTHER)
Cone18ag0517 284 Gene3D Glycerol uptake facilitator protein. 24 284 IPR023271 -
Cone18ag0517 284 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone18ag0517 Cone-Chr18:2534956 Cone8ag1291 Cone-Chr8:10585800 4.37E-155 dispersed
Cone1ag1352 Cone-Chr1:56550924 Cone18ag0517 Cone-Chr18:2534956 7.60E-183 wgd
Cone1ag0730 Cone-Chr1:6731374 Cone18ag0517 Cone-Chr18:2534956 2.81E-177 wgd
Cone10ag0252 Cone-Chr10:1213414 Cone18ag0517 Cone-Chr18:2534956 1.03E-180 wgd
Cone18ag0517 Cone-Chr18:2534956 Cone3ag0280 Cone-Chr3:1462429 5.40E-82 wgd
Cone18ag0517 Cone-Chr18:2534956 Cone5ag0337 Cone-Chr5:1440129 5.57E-184 wgd
Cone18ag0517 Cone-Chr18:2534956 Cone5ag1231 Cone-Chr5:5673499 7.25E-180 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone18ag0517 K09872 - gmx:100815583 523.087