Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone18ag0519 ATGATAAGAGTAATGGATTCTGTAAAAGAATCAGAGAAATCCTTAGATTCGCAACTATGGCATGCTTTTGCTGGTGGGATGGTTCAAATCCCACCTCTTAACTCAACAGTCTTCTACTTCCATCAAGGATATTCCGAATACCTCCCAAAAAAACTCCAATTCAATACCTCTCGTGTCCCTTCACTCATCCTTTGCAAAGTATCTGCAATCCGGTACATGGCGGATCCCGAAACCGACGAGGTTTTTGCAAAGATAAGGCTAATCCCTTTGCGGAATGATGGAATCACTCTTTTCGAAGAGGATGAAGAAGAAGGAAAACTCAATGGAATGAACGGCGGGGAAAAACCCCTTCCTTTCGTCAAGACATTGACCCAATCGGATGCGAATAACGGGGGAGGATTCTCCGTGCCCCGTTATTGCGCGGAGACTATTTTACCCCGCTTGGACTACTCATCAGAGCCGCCTGTCCAAACCATTTTCGTGAAAGATGTTCACGGTGTGATGTGGAAATTTAGGCATATATATAGAGGGACTCCACGTCGCCACCTACTAACGACTGGTTGGAGTAATTTCGTCAACCAGAAGAAGCTAGTGGCGGGGGATTCAGTTGTGTTTTTCCGGGCTGAGAATGGGGATCTTTCGCTTGGGATCAGACGGGCCAAGAGGGGAATAGGGGGCAGGTCCTCAGGGTGGAACAGTAATCATAGTCAATTCGGGGGGTATTGTTCGAGTTTGGATAATTCAGTTGGTGGGAGAGTGAGTGTTGAGTCGGTTATGGAAGCGGGGGACCTTGCGGTTAGTGGACAGCCGTTTGATGTTGTTTATTATCCGTGTGCTAGCACGCCAGATTTTTGCGTGAGGGCTTCTGAGGTGAGAGCGGCGATGCATATAAGGTGGTGTTCTGGGATGAGGTTTAAGATGCCGTTTGAAACAGAAGATCCGTCGAGGATGAGTTGGTTTGCTGGAACTATATCTTCCGTTCAGGCTGTGGATCCTGTCAATTCACCTGATTCTCCATGGCGACTTCTACAGGTAAATTGGGATGAACCGGATTTGCTACAAAATGTGAAGCGAGTTAACCCGTGGGCGATTGAAGTGGCATCAAACATGCCCACCATCCACCACCTCTCACCCTTCTCGCCGCCAAGAAAGAAGATGCGGGGCTCACACACCCCGGACCTTTCCATGTTCAGCCAGCTTCCGATCCCGTCGTTTTGCACCAGCCCCACCGACTTCCTCAGTTTAACGGGCTCCACAAGATTTCCCAACAATATATTTCCGGGAAGCATACAGGGAGCCAGGCATGCTCAATTTGGACTCTCGCCTCCGTCTTCATATAGTATCCCTTTTGTTGATTTTCAGCTTCTTGAGAAATCTGGACCTGTTCCTACAATCCTGAGTGGAAACTTCACAGGAATATCTAAAAATCACGAAAGCAAAGAATCTTCTTGGCTGACCATGGGAGATTCTTCGAATCAAAGTTCAAAGGAGAACAATGAGAAGAAAACGGGAAAAATCTTATTGTTCGGCCAAGTTATTCAACCCAATCAGCCGATGATTAATTCCAAGAGCTCTACTTCGATTGATACAAACGGAAACAGTTCATCCATTGAGAATCAAGTGAAGGCCCAAAACCCGTCTGATGGGTCAGAATCAGATAGAGGGTCACTTTCCTTTGAGGAGACAAATGAAAAAGTATCGATCGATATGTTCGGGGTAGGGAGCTCACAGATGCCAATCTCTGTTCTTTAA 1752 46.8 MIRVMDSVKESEKSLDSQLWHAFAGGMVQIPPLNSTVFYFHQGYSEYLPKKLQFNTSRVPSLILCKVSAIRYMADPETDEVFAKIRLIPLRNDGITLFEEDEEEGKLNGMNGGEKPLPFVKTLTQSDANNGGGFSVPRYCAETILPRLDYSSEPPVQTIFVKDVHGVMWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSVVFFRAENGDLSLGIRRAKRGIGGRSSGWNSNHSQFGGYCSSLDNSVGGRVSVESVMEAGDLAVSGQPFDVVYYPCASTPDFCVRASEVRAAMHIRWCSGMRFKMPFETEDPSRMSWFAGTISSVQAVDPVNSPDSPWRLLQVNWDEPDLLQNVKRVNPWAIEVASNMPTIHHLSPFSPPRKKMRGSHTPDLSMFSQLPIPSFCTSPTDFLSLTGSTRFPNNIFPGSIQGARHAQFGLSPPSSYSIPFVDFQLLEKSGPVPTILSGNFTGISKNHESKESSWLTMGDSSNQSSKENNEKKTGKILLFGQVIQPNQPMINSKSSTSIDTNGNSSSIENQVKAQNPSDGSESDRGSLSFEETNEKVSIDMFGVGSSQMPISVL 583
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 2547457 2550167 - Conep18aG0053300.1 Cone18ag0519 457480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone18ag0519 583 FunFam Auxin response factor 117 221 - -
Cone18ag0519 583 CDD B3_DNA 119 219 IPR003340 GO:0003677(InterPro)
Cone18ag0519 583 SMART B3_2 119 221 IPR003340 GO:0003677(InterPro)
Cone18ag0519 583 Pfam Auxin response factor 264 344 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cone18ag0519 583 MobiDBLite consensus disorder prediction 478 494 - -
Cone18ag0519 583 Gene3D - 298 372 - -
Cone18ag0519 583 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 14 567 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cone18ag0519 583 FunFam Auxin response factor 299 372 - -
Cone18ag0519 583 Gene3D - 118 221 IPR015300 -
Cone18ag0519 583 MobiDBLite consensus disorder prediction 517 558 - -
Cone18ag0519 583 MobiDBLite consensus disorder prediction 478 500 - -
Cone18ag0519 583 MobiDBLite consensus disorder prediction 517 553 - -
Cone18ag0519 583 SUPERFAMILY DNA-binding pseudobarrel domain 117 225 IPR015300 -
Cone18ag0519 583 Pfam B3 DNA binding domain 119 220 IPR003340 GO:0003677(InterPro)
Cone18ag0519 583 ProSiteProfiles B3 DNA-binding domain profile. 119 221 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone18ag0519 Cone-Chr18:2547457 Cone20ag0487 Cone-Chr20:2596306 3.99E-103 dispersed
Cone1ag0736 Cone-Chr1:6827721 Cone18ag0519 Cone-Chr18:2547457 1.14E-170 wgd
Cone10ag0249 Cone-Chr10:1202879 Cone18ag0519 Cone-Chr18:2547457 1.45E-170 wgd
Cone11ag1059 Cone-Chr11:8336690 Cone18ag0519 Cone-Chr18:2547457 0 wgd
Cone13ag1264 Cone-Chr13:9569338 Cone18ag0519 Cone-Chr18:2547457 5.32E-184 wgd
Cone18ag0519 Cone-Chr18:2547457 Cone19ag1251 Cone-Chr19:8592477 1.07E-182 wgd
Cone18ag0519 Cone-Chr18:2547457 Cone3ag0278 Cone-Chr3:1451499 5.76E-174 wgd
Cone18ag0519 Cone-Chr18:2547457 Cone5ag1237 Cone-Chr5:5735524 1.56E-177 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45162 PF01103 Omp85 1.70E-22 CL0193 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone18ag0519 K14486 - rcu:8278088 616.305