Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone18ag0519 | ATGATAAGAGTAATGGATTCTGTAAAAGAATCAGAGAAATCCTTAGATTCGCAACTATGGCATGCTTTTGCTGGTGGGATGGTTCAAATCCCACCTCTTAACTCAACAGTCTTCTACTTCCATCAAGGATATTCCGAATACCTCCCAAAAAAACTCCAATTCAATACCTCTCGTGTCCCTTCACTCATCCTTTGCAAAGTATCTGCAATCCGGTACATGGCGGATCCCGAAACCGACGAGGTTTTTGCAAAGATAAGGCTAATCCCTTTGCGGAATGATGGAATCACTCTTTTCGAAGAGGATGAAGAAGAAGGAAAACTCAATGGAATGAACGGCGGGGAAAAACCCCTTCCTTTCGTCAAGACATTGACCCAATCGGATGCGAATAACGGGGGAGGATTCTCCGTGCCCCGTTATTGCGCGGAGACTATTTTACCCCGCTTGGACTACTCATCAGAGCCGCCTGTCCAAACCATTTTCGTGAAAGATGTTCACGGTGTGATGTGGAAATTTAGGCATATATATAGAGGGACTCCACGTCGCCACCTACTAACGACTGGTTGGAGTAATTTCGTCAACCAGAAGAAGCTAGTGGCGGGGGATTCAGTTGTGTTTTTCCGGGCTGAGAATGGGGATCTTTCGCTTGGGATCAGACGGGCCAAGAGGGGAATAGGGGGCAGGTCCTCAGGGTGGAACAGTAATCATAGTCAATTCGGGGGGTATTGTTCGAGTTTGGATAATTCAGTTGGTGGGAGAGTGAGTGTTGAGTCGGTTATGGAAGCGGGGGACCTTGCGGTTAGTGGACAGCCGTTTGATGTTGTTTATTATCCGTGTGCTAGCACGCCAGATTTTTGCGTGAGGGCTTCTGAGGTGAGAGCGGCGATGCATATAAGGTGGTGTTCTGGGATGAGGTTTAAGATGCCGTTTGAAACAGAAGATCCGTCGAGGATGAGTTGGTTTGCTGGAACTATATCTTCCGTTCAGGCTGTGGATCCTGTCAATTCACCTGATTCTCCATGGCGACTTCTACAGGTAAATTGGGATGAACCGGATTTGCTACAAAATGTGAAGCGAGTTAACCCGTGGGCGATTGAAGTGGCATCAAACATGCCCACCATCCACCACCTCTCACCCTTCTCGCCGCCAAGAAAGAAGATGCGGGGCTCACACACCCCGGACCTTTCCATGTTCAGCCAGCTTCCGATCCCGTCGTTTTGCACCAGCCCCACCGACTTCCTCAGTTTAACGGGCTCCACAAGATTTCCCAACAATATATTTCCGGGAAGCATACAGGGAGCCAGGCATGCTCAATTTGGACTCTCGCCTCCGTCTTCATATAGTATCCCTTTTGTTGATTTTCAGCTTCTTGAGAAATCTGGACCTGTTCCTACAATCCTGAGTGGAAACTTCACAGGAATATCTAAAAATCACGAAAGCAAAGAATCTTCTTGGCTGACCATGGGAGATTCTTCGAATCAAAGTTCAAAGGAGAACAATGAGAAGAAAACGGGAAAAATCTTATTGTTCGGCCAAGTTATTCAACCCAATCAGCCGATGATTAATTCCAAGAGCTCTACTTCGATTGATACAAACGGAAACAGTTCATCCATTGAGAATCAAGTGAAGGCCCAAAACCCGTCTGATGGGTCAGAATCAGATAGAGGGTCACTTTCCTTTGAGGAGACAAATGAAAAAGTATCGATCGATATGTTCGGGGTAGGGAGCTCACAGATGCCAATCTCTGTTCTTTAA | 1752 | 46.8 | MIRVMDSVKESEKSLDSQLWHAFAGGMVQIPPLNSTVFYFHQGYSEYLPKKLQFNTSRVPSLILCKVSAIRYMADPETDEVFAKIRLIPLRNDGITLFEEDEEEGKLNGMNGGEKPLPFVKTLTQSDANNGGGFSVPRYCAETILPRLDYSSEPPVQTIFVKDVHGVMWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSVVFFRAENGDLSLGIRRAKRGIGGRSSGWNSNHSQFGGYCSSLDNSVGGRVSVESVMEAGDLAVSGQPFDVVYYPCASTPDFCVRASEVRAAMHIRWCSGMRFKMPFETEDPSRMSWFAGTISSVQAVDPVNSPDSPWRLLQVNWDEPDLLQNVKRVNPWAIEVASNMPTIHHLSPFSPPRKKMRGSHTPDLSMFSQLPIPSFCTSPTDFLSLTGSTRFPNNIFPGSIQGARHAQFGLSPPSSYSIPFVDFQLLEKSGPVPTILSGNFTGISKNHESKESSWLTMGDSSNQSSKENNEKKTGKILLFGQVIQPNQPMINSKSSTSIDTNGNSSSIENQVKAQNPSDGSESDRGSLSFEETNEKVSIDMFGVGSSQMPISVL | 583 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
18 | 2547457 | 2550167 | - | Conep18aG0053300.1 | Cone18ag0519 | 457480 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone18ag0519 | 583 | FunFam | Auxin response factor | 117 | 221 | - | - | |
Cone18ag0519 | 583 | CDD | B3_DNA | 119 | 219 | IPR003340 | GO:0003677(InterPro) | |
Cone18ag0519 | 583 | SMART | B3_2 | 119 | 221 | IPR003340 | GO:0003677(InterPro) | |
Cone18ag0519 | 583 | Pfam | Auxin response factor | 264 | 344 | IPR010525 | GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro) | |
Cone18ag0519 | 583 | MobiDBLite | consensus disorder prediction | 478 | 494 | - | - | |
Cone18ag0519 | 583 | Gene3D | - | 298 | 372 | - | - | |
Cone18ag0519 | 583 | PANTHER | AUXIN RESPONSE FACTOR 4-RELATED | 14 | 567 | IPR044835 | GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro) | |
Cone18ag0519 | 583 | FunFam | Auxin response factor | 299 | 372 | - | - | |
Cone18ag0519 | 583 | Gene3D | - | 118 | 221 | IPR015300 | - | |
Cone18ag0519 | 583 | MobiDBLite | consensus disorder prediction | 517 | 558 | - | - | |
Cone18ag0519 | 583 | MobiDBLite | consensus disorder prediction | 478 | 500 | - | - | |
Cone18ag0519 | 583 | MobiDBLite | consensus disorder prediction | 517 | 553 | - | - | |
Cone18ag0519 | 583 | SUPERFAMILY | DNA-binding pseudobarrel domain | 117 | 225 | IPR015300 | - | |
Cone18ag0519 | 583 | Pfam | B3 DNA binding domain | 119 | 220 | IPR003340 | GO:0003677(InterPro) | |
Cone18ag0519 | 583 | ProSiteProfiles | B3 DNA-binding domain profile. | 119 | 221 | IPR003340 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone18ag0519 | Cone-Chr18:2547457 | Cone20ag0487 | Cone-Chr20:2596306 | 3.99E-103 | dispersed | |
Cone1ag0736 | Cone-Chr1:6827721 | Cone18ag0519 | Cone-Chr18:2547457 | 1.14E-170 | wgd | |
Cone10ag0249 | Cone-Chr10:1202879 | Cone18ag0519 | Cone-Chr18:2547457 | 1.45E-170 | wgd | |
Cone11ag1059 | Cone-Chr11:8336690 | Cone18ag0519 | Cone-Chr18:2547457 | 0 | wgd | |
Cone13ag1264 | Cone-Chr13:9569338 | Cone18ag0519 | Cone-Chr18:2547457 | 5.32E-184 | wgd | |
Cone18ag0519 | Cone-Chr18:2547457 | Cone19ag1251 | Cone-Chr19:8592477 | 1.07E-182 | wgd | |
Cone18ag0519 | Cone-Chr18:2547457 | Cone3ag0278 | Cone-Chr3:1451499 | 5.76E-174 | wgd | |
Cone18ag0519 | Cone-Chr18:2547457 | Cone5ag1237 | Cone-Chr5:5735524 | 1.56E-177 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
45162 | PF01103 | Omp85 | 1.70E-22 | CL0193 | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone18ag0519 | K14486 | - | rcu:8278088 | 616.305 |