Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone18ag0538 ATGTTTCCTTCAGTCTGCATTATACTGATTTGCCTCTTGATAGCTCTCACTAGAGCTAGAGCTGCTGCTGCTGCTGCTGCTTTTAACCTCTCTCTGCCTCATCAGCACCCTGACCCTGAATCTGTTGCTCAACAACTTCAAAGGAGGGTGAATGCATCTCTTTCCAGAAGACAACTCCTTCCCGTCCAAACAAAGACTCAATCCTCTTGCCTGACCGGAAACCCCATTGACGACTGCTGGCGCTGCGCCTCAAACTGGAATGCCAACCGGCAGAGGCTCGCCGACTGTGGCATTGGCTTCGGACAAGACGCCATGGGCGGAAAAGGCGGTCAGATCTATGTCGTTACCGATTCCTCCGACTCCGACCCCGTCAACCCCAAACCGGGCACCCTCCGGTTCGCCGTGCTCCAAGAAGAACCGCTCTGGATCACCTTCTCCGCCGACATGACGATCAAACTCAAGTACGAGCTCCTGATCAACAGCTTCAAAACAATCGACGGTCGGGGAGCTAACGTCCACATTACTGGCGGTGGGTGCCTCACACTACAGTACGTCTCCAACGTAATAATCCACAACATCCACGTCCACCACTGTAAACCAGCGGGCAACACTAACATACGGTCGAGCCCAACGCACGTCGGGTACCGTGGAAAATCGGACGGTGACGGGATCTCCATCTTCAGCTCGCGGAAGATCTGGATCGACCATTGCTCCCTGTCATATTGTACGGACGGATTGATCGATGCCATAATGGGGTCCACTGGGATAACTATCTCTAACAACTACTTCGCGCACCACGATGAGGTTATGCTGTTGGGGCACGATGATCAGTATGCACCCGACGACGGCATGCAGGTAACGATAGCGTTTAATCACTTCGGTGACGGGCTGGTGCAGCGTATGCCTCGGTGTAGACGCGGGTACATACACGTGGTGAACAATGATTTCACTGCATGGGAGATGTATGCTATTGGCGGTAGCGCTAACCCTACCATTAACAGTCAGGGGAATCGTTACACCGCTCCAACTGACCTCAATGCCAAGGAGGTTACGAAGCGCGTGGATACGAACGCGGGGGATTGGTCAGATTGGAATTGGAGGTCAGATGGGGATGTAATGGTAAATGGAGCGTTCTTCGTGCCGTCAGGGGCTGGGCGTAGCAGTCAGTATAGCAAGGCCGTCAGTGTGGAGCCCAAATCAGCTGGTCTCATCAACCAGCTCACCGTGAATGCCGGTGCTTTTGGTGGGCCCAGGGATGATCGTAGTGGTGGTGGGACTACTTCAGATCGAAGTGGCACTGTGAACAACGGAAATCCAGGAACGGGCAGTAGCGGCAGCAGTGGCGACGGTGATTATTTCGGAATGATATTTGGTGGCGGTGGTTACAGTGGCGGTCCGCCTCAATTATGCTTATCATCTATTAATTTTGTCTTAACGTTGACTTTGATTTTTATCTCCATTTGA 1464 52.73 MFPSVCIILICLLIALTRARAAAAAAAFNLSLPHQHPDPESVAQQLQRRVNASLSRRQLLPVQTKTQSSCLTGNPIDDCWRCASNWNANRQRLADCGIGFGQDAMGGKGGQIYVVTDSSDSDPVNPKPGTLRFAVLQEEPLWITFSADMTIKLKYELLINSFKTIDGRGANVHITGGGCLTLQYVSNVIIHNIHVHHCKPAGNTNIRSSPTHVGYRGKSDGDGISIFSSRKIWIDHCSLSYCTDGLIDAIMGSTGITISNNYFAHHDEVMLLGHDDQYAPDDGMQVTIAFNHFGDGLVQRMPRCRRGYIHVVNNDFTAWEMYAIGGSANPTINSQGNRYTAPTDLNAKEVTKRVDTNAGDWSDWNWRSDGDVMVNGAFFVPSGAGRSSQYSKAVSVEPKSAGLINQLTVNAGAFGGPRDDRSGGGTTSDRSGTVNNGNPGTGSSGSSGDGDYFGMIFGGGGYSGGPPQLCLSSINFVLTLTLIFISI 487
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 2654646 2657688 - Conep18aG0055400.1 Cone18ag0538 457499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone18ag0538 487 Gene3D - 73 415 IPR012334 -
Cone18ag0538 487 PRINTS Pollen allergen Amb family signature 364 388 IPR018082 -
Cone18ag0538 487 PRINTS Pollen allergen Amb family signature 96 113 IPR018082 -
Cone18ag0538 487 PRINTS Pollen allergen Amb family signature 120 145 IPR018082 -
Cone18ag0538 487 PRINTS Pollen allergen Amb family signature 220 241 IPR018082 -
Cone18ag0538 487 PRINTS Pollen allergen Amb family signature 322 341 IPR018082 -
Cone18ag0538 487 PRINTS Pollen allergen Amb family signature 393 416 IPR018082 -
Cone18ag0538 487 PRINTS Pollen allergen Amb family signature 300 319 IPR018082 -
Cone18ag0538 487 PRINTS Pollen allergen Amb family signature 156 172 IPR018082 -
Cone18ag0538 487 FunFam Pectate lyase 73 415 - -
Cone18ag0538 487 MobiDBLite consensus disorder prediction 426 447 - -
Cone18ag0538 487 Pfam Pectate lyase 156 337 IPR002022 -
Cone18ag0538 487 PANTHER PECTATE LYASE 18-RELATED 21 414 IPR045032 GO:0030570(InterPro)
Cone18ag0538 487 MobiDBLite consensus disorder prediction 412 447 - -
Cone18ag0538 487 SMART amb_all 148 345 IPR002022 -
Cone18ag0538 487 SUPERFAMILY Pectin lyase-like 68 398 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone18ag0538 Cone-Chr18:2654646 Cone7ag0370 Cone-Chr7:1620380 7.12E-182 dispersed
Cone1ag1378 Cone-Chr1:56664382 Cone18ag0538 Cone-Chr18:2654646 6.59E-241 wgd
Cone1ag0495 Cone-Chr1:4834236 Cone18ag0538 Cone-Chr18:2654646 7.76E-50 wgd
Cone10ag0217 Cone-Chr10:1059074 Cone18ag0538 Cone-Chr18:2654646 1.85E-209 wgd
Cone11ag1037 Cone-Chr11:8205776 Cone18ag0538 Cone-Chr18:2654646 2.39e-310 wgd
Cone18ag0538 Cone-Chr18:2654646 Cone3ag0244 Cone-Chr3:1304395 1.32E-207 wgd
Cone18ag0538 Cone-Chr18:2654646 Cone5ag0370 Cone-Chr5:1575229 2.84E-237 wgd
Cone18ag0538 Cone-Chr18:2654646 Cone5ag1260 Cone-Chr5:6004920 5.17E-50 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone18ag0538 K01728 - mdm:139197429 692.575