Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone18ag0538 | ATGTTTCCTTCAGTCTGCATTATACTGATTTGCCTCTTGATAGCTCTCACTAGAGCTAGAGCTGCTGCTGCTGCTGCTGCTTTTAACCTCTCTCTGCCTCATCAGCACCCTGACCCTGAATCTGTTGCTCAACAACTTCAAAGGAGGGTGAATGCATCTCTTTCCAGAAGACAACTCCTTCCCGTCCAAACAAAGACTCAATCCTCTTGCCTGACCGGAAACCCCATTGACGACTGCTGGCGCTGCGCCTCAAACTGGAATGCCAACCGGCAGAGGCTCGCCGACTGTGGCATTGGCTTCGGACAAGACGCCATGGGCGGAAAAGGCGGTCAGATCTATGTCGTTACCGATTCCTCCGACTCCGACCCCGTCAACCCCAAACCGGGCACCCTCCGGTTCGCCGTGCTCCAAGAAGAACCGCTCTGGATCACCTTCTCCGCCGACATGACGATCAAACTCAAGTACGAGCTCCTGATCAACAGCTTCAAAACAATCGACGGTCGGGGAGCTAACGTCCACATTACTGGCGGTGGGTGCCTCACACTACAGTACGTCTCCAACGTAATAATCCACAACATCCACGTCCACCACTGTAAACCAGCGGGCAACACTAACATACGGTCGAGCCCAACGCACGTCGGGTACCGTGGAAAATCGGACGGTGACGGGATCTCCATCTTCAGCTCGCGGAAGATCTGGATCGACCATTGCTCCCTGTCATATTGTACGGACGGATTGATCGATGCCATAATGGGGTCCACTGGGATAACTATCTCTAACAACTACTTCGCGCACCACGATGAGGTTATGCTGTTGGGGCACGATGATCAGTATGCACCCGACGACGGCATGCAGGTAACGATAGCGTTTAATCACTTCGGTGACGGGCTGGTGCAGCGTATGCCTCGGTGTAGACGCGGGTACATACACGTGGTGAACAATGATTTCACTGCATGGGAGATGTATGCTATTGGCGGTAGCGCTAACCCTACCATTAACAGTCAGGGGAATCGTTACACCGCTCCAACTGACCTCAATGCCAAGGAGGTTACGAAGCGCGTGGATACGAACGCGGGGGATTGGTCAGATTGGAATTGGAGGTCAGATGGGGATGTAATGGTAAATGGAGCGTTCTTCGTGCCGTCAGGGGCTGGGCGTAGCAGTCAGTATAGCAAGGCCGTCAGTGTGGAGCCCAAATCAGCTGGTCTCATCAACCAGCTCACCGTGAATGCCGGTGCTTTTGGTGGGCCCAGGGATGATCGTAGTGGTGGTGGGACTACTTCAGATCGAAGTGGCACTGTGAACAACGGAAATCCAGGAACGGGCAGTAGCGGCAGCAGTGGCGACGGTGATTATTTCGGAATGATATTTGGTGGCGGTGGTTACAGTGGCGGTCCGCCTCAATTATGCTTATCATCTATTAATTTTGTCTTAACGTTGACTTTGATTTTTATCTCCATTTGA | 1464 | 52.73 | MFPSVCIILICLLIALTRARAAAAAAAFNLSLPHQHPDPESVAQQLQRRVNASLSRRQLLPVQTKTQSSCLTGNPIDDCWRCASNWNANRQRLADCGIGFGQDAMGGKGGQIYVVTDSSDSDPVNPKPGTLRFAVLQEEPLWITFSADMTIKLKYELLINSFKTIDGRGANVHITGGGCLTLQYVSNVIIHNIHVHHCKPAGNTNIRSSPTHVGYRGKSDGDGISIFSSRKIWIDHCSLSYCTDGLIDAIMGSTGITISNNYFAHHDEVMLLGHDDQYAPDDGMQVTIAFNHFGDGLVQRMPRCRRGYIHVVNNDFTAWEMYAIGGSANPTINSQGNRYTAPTDLNAKEVTKRVDTNAGDWSDWNWRSDGDVMVNGAFFVPSGAGRSSQYSKAVSVEPKSAGLINQLTVNAGAFGGPRDDRSGGGTTSDRSGTVNNGNPGTGSSGSSGDGDYFGMIFGGGGYSGGPPQLCLSSINFVLTLTLIFISI | 487 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
18 | 2654646 | 2657688 | - | Conep18aG0055400.1 | Cone18ag0538 | 457499 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone18ag0538 | 487 | Gene3D | - | 73 | 415 | IPR012334 | - | |
Cone18ag0538 | 487 | PRINTS | Pollen allergen Amb family signature | 364 | 388 | IPR018082 | - | |
Cone18ag0538 | 487 | PRINTS | Pollen allergen Amb family signature | 96 | 113 | IPR018082 | - | |
Cone18ag0538 | 487 | PRINTS | Pollen allergen Amb family signature | 120 | 145 | IPR018082 | - | |
Cone18ag0538 | 487 | PRINTS | Pollen allergen Amb family signature | 220 | 241 | IPR018082 | - | |
Cone18ag0538 | 487 | PRINTS | Pollen allergen Amb family signature | 322 | 341 | IPR018082 | - | |
Cone18ag0538 | 487 | PRINTS | Pollen allergen Amb family signature | 393 | 416 | IPR018082 | - | |
Cone18ag0538 | 487 | PRINTS | Pollen allergen Amb family signature | 300 | 319 | IPR018082 | - | |
Cone18ag0538 | 487 | PRINTS | Pollen allergen Amb family signature | 156 | 172 | IPR018082 | - | |
Cone18ag0538 | 487 | FunFam | Pectate lyase | 73 | 415 | - | - | |
Cone18ag0538 | 487 | MobiDBLite | consensus disorder prediction | 426 | 447 | - | - | |
Cone18ag0538 | 487 | Pfam | Pectate lyase | 156 | 337 | IPR002022 | - | |
Cone18ag0538 | 487 | PANTHER | PECTATE LYASE 18-RELATED | 21 | 414 | IPR045032 | GO:0030570(InterPro) | |
Cone18ag0538 | 487 | MobiDBLite | consensus disorder prediction | 412 | 447 | - | - | |
Cone18ag0538 | 487 | SMART | amb_all | 148 | 345 | IPR002022 | - | |
Cone18ag0538 | 487 | SUPERFAMILY | Pectin lyase-like | 68 | 398 | IPR011050 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone18ag0538 | Cone-Chr18:2654646 | Cone7ag0370 | Cone-Chr7:1620380 | 7.12E-182 | dispersed | |
Cone1ag1378 | Cone-Chr1:56664382 | Cone18ag0538 | Cone-Chr18:2654646 | 6.59E-241 | wgd | |
Cone1ag0495 | Cone-Chr1:4834236 | Cone18ag0538 | Cone-Chr18:2654646 | 7.76E-50 | wgd | |
Cone10ag0217 | Cone-Chr10:1059074 | Cone18ag0538 | Cone-Chr18:2654646 | 1.85E-209 | wgd | |
Cone11ag1037 | Cone-Chr11:8205776 | Cone18ag0538 | Cone-Chr18:2654646 | 2.39e-310 | wgd | |
Cone18ag0538 | Cone-Chr18:2654646 | Cone3ag0244 | Cone-Chr3:1304395 | 1.32E-207 | wgd | |
Cone18ag0538 | Cone-Chr18:2654646 | Cone5ag0370 | Cone-Chr5:1575229 | 2.84E-237 | wgd | |
Cone18ag0538 | Cone-Chr18:2654646 | Cone5ag1260 | Cone-Chr5:6004920 | 5.17E-50 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone18ag0538 | K01728 | - | mdm:139197429 | 692.575 |