Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone18ag0574 ATGGTGGGAGCAGAGTTCATAGGAACCTTCATACTCATCTTTTCTGGGATGGCTACAGCTATTTTGAACGAAAAGACACATGGCGCTGAGTCACTATTGGGCGTAGCTTCAGCCGGTGGCCTATCGGTTATGATCCTTGTTTCATCTACGGCCCACATCTCAGGTGCCCATTTCAACCCGGCAGTAACCATAGCCATAACTGCAATGAAGCATTTTCCATGGAAACATGTGCCGGTTTATATTGGAGCACAAATGCTGGCATCATTATGTGCTTCATTTGCAGTAAAAGGAATATTTAAGCCTATAATGAGTGGTGCAGTAACTGTTCCTTCAGGAGGATATGGTCAAGCTTTCGCAATTGAATTTATCATTAGCTTCAACCTCATGTTTGTTGCCACTGCCCTTTCCACTGATACTAGAGCTGTGGGAAGGCTTGCAGGGATAGCAGTGGGGGCCACTGTCATGCTCAATGTCCTCATTGCTGGGGAAATAACAGGAGCTTGTATGAATCCAGTGAGAGCTCTCGGACCAGCTATAGCCGCCGGCAATTTCAAAGGTATATGGATTTATCTTACAGCTCCTATCCTCGGGGCACTCTGTGGGGCCGGGGCCTATTCTGCTATTAAGATCCCGGACAATGAAGTTTCTCAGAGAAAGTCTTTGCCGACATGA 672 46.73 MVGAEFIGTFILIFSGMATAILNEKTHGAESLLGVASAGGLSVMILVSSTAHISGAHFNPAVTIAITAMKHFPWKHVPVYIGAQMLASLCASFAVKGIFKPIMSGAVTVPSGGYGQAFAIEFIISFNLMFVATALSTDTRAVGRLAGIAVGATVMLNVLIAGEITGACMNPVRALGPAIAAGNFKGIWIYLTAPILGALCGAGAYSAIKIPDNEVSQRKSLPT 223
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 2847073 2848384 - Conep18aG0059000.1 Cone18ag0574 457535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone18ag0574 223 PANTHER AQUAPORIN NIP2-1 2 213 IPR034294 -
Cone18ag0574 223 Pfam Major intrinsic protein 4 205 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone18ag0574 223 SUPERFAMILY Aquaporin-like 3 215 IPR023271 -
Cone18ag0574 223 PRINTS Major intrinsic protein family signature 188 208 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone18ag0574 223 PRINTS Major intrinsic protein family signature 39 63 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone18ag0574 223 PRINTS Major intrinsic protein family signature 151 173 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone18ag0574 223 PRINTS Major intrinsic protein family signature 76 95 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone18ag0574 223 PRINTS Major intrinsic protein family signature 120 138 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone18ag0574 223 ProSitePatterns MIP family signature. 57 65 IPR022357 -
Cone18ag0574 223 Gene3D Glycerol uptake facilitator protein. 1 220 IPR023271 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0266 Cone-Chr17:1262125 Cone18ag0574 Cone-Chr18:2847073 8.87E-116 dispersed
Cone18ag0574 Cone-Chr18:2847073 Cone20ag1150 Cone-Chr20:7806133 2.41E-117 dispersed
Cone11ag1005 Cone-Chr11:8023306 Cone18ag0574 Cone-Chr18:2847073 3.04E-138 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone18ag0574 K09874 - cit:102629705 334.339