Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone18ag0578 ATGGCTCGGCCCCAACAGCGGTACCGCGGCGTCCGACAACGGCATTGGGGCTCTTGGGTGTCCGAAATCCGACACCCACTCCTAAAGACAAGAATATGGCTCGGCACATTTGAAACAGCAGAAGACGCGGCGAGGGCTTACGATGAAGCAGCGAGACTTATGTGTTGTCCGAAAGAACGTACCAATTTCTCTTACACATCATCGCCGACAAGCAAGCTTCTGTCGGCTACTTTGACGGAGAAATTACAGAAATGCCACTTGACCTCGCTCAAACTGACCAAGAAAAATGCTGCTAATAACGTTAATGATCAGCATCAGAAAACACAGACGTTTAAGCAAACTATGAATAATTGTAATTATTCCATGAGTAATTACGAAAATTCCGGGACTAGATCGTCGGGCGACGGTGTTATTGGTGTTGTCGGATGGCCGGAGAAGAAGATTGAAGCCGGAGATATGATCATGAGGTGGCCGGAGAGTAACTGTAGTGAGCAATTTTTGCAGCCGCTAGAAGATGATAACATAGAGCAGATGATACAAGAGTTGCTTGATCTTGGGTCTTCTATCGAGCTTAATTACTAA 582 46.39 MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCCPKERTNFSYTSSPTSKLLSATLTEKLQKCHLTSLKLTKKNAANNVNDQHQKTQTFKQTMNNCNYSMSNYENSGTRSSGDGVIGVVGWPEKKIEAGDMIMRWPESNCSEQFLQPLEDDNIEQMIQELLDLGSSIELNY 193
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 2866079 2866759 + Conep18aG0059400.1 Cone18ag0578 457539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone18ag0578 193 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 116 IPR050913 -
Cone18ag0578 193 SMART rav1_2 7 70 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone18ag0578 193 Pfam AP2 domain 7 54 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone18ag0578 193 CDD AP2 6 63 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone18ag0578 193 SUPERFAMILY DNA-binding domain 7 65 IPR016177 GO:0003677(InterPro)
Cone18ag0578 193 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone18ag0578 193 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone18ag0578 193 FunFam Ethylene-responsive transcription factor 2 6 65 - -
Cone18ag0578 193 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone18ag0578 193 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag1001 Cone-Chr11:7999408 Cone18ag0578 Cone-Chr18:2866079 1.35E-119 dispersed
Cone17ag0257 Cone-Chr17:1218031 Cone18ag0578 Cone-Chr18:2866079 2.54E-62 dispersed
Cone17ag0995 Cone-Chr17:7664321 Cone18ag0578 Cone-Chr18:2866079 2.91E-51 dispersed
Cone18ag0578 Cone-Chr18:2866079 Cone7ag1675 Cone-Chr7:11230679 5.28E-51 dispersed
Cone18ag0578 Cone-Chr18:2866079 Cone18ag0582 Cone-Chr18:2885366 8.71E-17 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45167 PF07714 PK_Tyr_Ser-Thr 5.80E-46 CL0016 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone18ag0578 - - - 0.0