Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone18ag0589 ATGGGGGTTCAAACAATGGGATCACAAGGTGGGGGAGATAGTAACGGCAAACAATCCCAATTCCAGCCATTAGCTCGTCAAAGCTCGATGTATAGTCTCACTCTAGATGAGGTTCAAAACCAATTAGGTGACTTAGGAAAGCCGCTTAGCAGCATGAACCTAGATGAGCTACTCAAAAACGTATGGACAGTCGAGGCAAACCAATCATCCGTCGGTATGGATATCGAAGGCAATGGTGGCGGGACCGAATTGGTGAATCAGCCAGTGACACTTCAGCACCAGGCGAGCGTTTCATTAACCAGTGTGCTTAGCAAGAAAACAGTGGATGAGGTATGGAGAGATATCCAACAAAGCAAAGAAGGAAACGAGGGGGACAGGACGAAGAAGACGGCAAGGGAGAGGCAATCCACTCTGGGGGAGATGACGTTGGAGGACTTTTTGGTGAAAGCGGGTGTTGTAGCGGAAGCAGAAGGTTGTTCTAGTAAGAAAAGTAGTATGGAAGTAGTTGAGGGGGGAAATGTGGGGCCTCAATTTCCGGGACAGGCACAGCAGTGGGTGCAGTTCCCACAACAGAGTATGATGGGAGTTTATATTCCGGGCCTGCCTATGCATATGGATGGGCGTGGGATGGAAGTTGCTTATGGGGAGAATACGGTAGGAGTACCTTCTCCTTTGATGGGGACAGTGTCGGATTCTCAGATGGCTGGAAGGAAGAGGGGAAACCCAGAGGACATTATTGAGAAGACGGTTGAGAGGAGACAGAAGAGGATGATTAAGAATCGGGAATCGGCTGCTCGATCACGAGCTAGGAAGCAGGCTTATACTAATGAGCTGGAGAACAAGGTTTCGAGATTGGAGGAGGAAAACGAGAGGCTTAGGAAGCAGAAGGAACTGGAGAAGATGCTGGCAACTGCACCACCTCCCGAGCCAAAGTATCAGCTAAGGAGAACTGCATCTTCCCCGTTCTAA 969 49.43 MGVQTMGSQGGGDSNGKQSQFQPLARQSSMYSLTLDEVQNQLGDLGKPLSSMNLDELLKNVWTVEANQSSVGMDIEGNGGGTELVNQPVTLQHQASVSLTSVLSKKTVDEVWRDIQQSKEGNEGDRTKKTARERQSTLGEMTLEDFLVKAGVVAEAEGCSSKKSSMEVVEGGNVGPQFPGQAQQWVQFPQQSMMGVYIPGLPMHMDGRGMEVAYGENTVGVPSPLMGTVSDSQMAGRKRGNPEDIIEKTVERRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLRKQKELEKMLATAPPPEPKYQLRRTASSPF 322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 2935282 2938081 + Conep18aG0060500.1 Cone18ag0589 457550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone18ag0589 322 Pfam bZIP transcription factor 252 301 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone18ag0589 322 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 250 295 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone18ag0589 322 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 26 320 IPR043452 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0045893(InterPro)
Cone18ag0589 322 Coils Coil 268 302 - -
Cone18ag0589 322 SUPERFAMILY Leucine zipper domain 252 297 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone18ag0589 322 SMART brlzneu 248 316 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone18ag0589 322 MobiDBLite consensus disorder prediction 114 135 - -
Cone18ag0589 322 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 255 270 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone18ag0589 322 MobiDBLite consensus disorder prediction 259 322 - -
Cone18ag0589 322 MobiDBLite consensus disorder prediction 1 25 - -
Cone18ag0589 322 MobiDBLite consensus disorder prediction 259 300 - -
Cone18ag0589 322 CDD bZIP_plant_BZIP46 252 306 - -
Cone18ag0589 322 Gene3D - 250 304 - -
Cone18ag0589 322 FunFam ABSCISIC ACID-INSENSITIVE 5-like protein 2 250 302 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone18ag0589 Cone-Chr18:2935282 Cone1ag1459 Cone-Chr1:56983815 8.70E-132 dispersed
Cone11ag1555 Cone-Chr11:10840297 Cone18ag0589 Cone-Chr18:2935282 1.82E-70 transposed
Cone11ag0988 Cone-Chr11:7935542 Cone18ag0589 Cone-Chr18:2935282 5.97E-181 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45169 PF13639 zf-RING_2 2.00E-12 CL0229 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone18ag0589 K14432 - mdm:103438647 429.869