Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone18ag0592 ATGACTTCCAGCTTCAAACCATATGGAAAAATCAGTGAAGCCGAGCAGGCCATGCTCGATGCTCGTCGGAGGGCACAAAAACGAATTTCCGTCATAATTATCTCCTCCCTACTCCTCATTGCCATCGTGGTTGCCGCCGTGTTAGGCACTTCAGCTGCCAGGAACAACTCCAATAAAGACGGGACGGAAAACAAACCTCTCTCAACTTCCATGAAAGCAGTCTGTGACATTACCTTATATCCCGAGACGTGTCAAAACGTCTTCGCGCCGTTAATTAACAGCTCAACCAACCTCATGCCAAACGATATCGCGAAGCTGTCGATTCGAGTCGCCCTGGACGAGCTCGAGAGAGCTTCCAACAAACTTTTCTCTCAAGCCATTTCGAATTCGACCGATATGTTGACAGTCCAAGCTCTGACAAATTGTCAAGAGTTACTGGATCTTGCCTTCGATCATTTGAACGAAACGCTCTCGTCCGATAAAACAACGTTCCTCCAAGCGATCGCCGATCTCCGGACATGGCTGAGCTCGGCCGCGACAGATCAACAGACCTGCATTGACGATCTGCAAGAAATCAATTCGACTCTAGGAAACAGCTTTGCCGGAATTTTGAAGAACTCGACCGAATTGACTAGCAATAGTCTCGCTATTACGACATGGTTGGGGAAATTGACTGGATCTTTGAATCTCCGCCGTTTGATGAGCTCGGGATCAGAGCCGGAGTGGATGGACGCGGCCGCGAGGAAGTTGCTGGAGAGTGCCGATCTGAGGAAGCAGGCGAAGATCGTGGTGGCGACAGACGGATCAGGTAAGTATAAGAAGATAAATGACGCATTGAAGGCGGTGCCTGATAAGAGTGATAAGAGGACAGTAATATATGTGAAGAGAGGAGTATATTATGAGAACGTGATAGTCGATAAGAACAAATGGAATGTCGTGGTTGTGGGTGACGGAATGACGGCCACCATTGTTTCCGGTTCCCTCAACTTTGTTGACGGCACTCCCACATTTTCCTCCGCTACTTTTGCTGTAAAGGGCAAGGGTTTCTGGGCACGAGACATAGGTTTCCGGAACACAGCAGGAGCGGCCAAACACCAAGCAGTGGCATTGATCAGTCAATCCGACCAGTCAGTTTTTTACCGTTGTCACTTCGATGCATTTCAAGACACCCTCTACGTGCATTCAAACCGTCAATTCTACCGTGAATGCAACATATACGGTACCGTTGATTTCATCTTTGGAAACTCTGCTGTTGTCATCCAAAGCAGTAACATTATGCCTAAGCAACCAATGCAAGGTCAGCAGAACACCATCACGGCCCAAGGAAAGATCGACCCGAATCAAAACACGGGCATTTCAATCCAGAATTGCTTAGTCAAGCCCTATGGTAACTTGGGTGACACGCGAACGTACCTCGGACGGCCATGGAAGAATTATTCGACAACCGTGTTTATGCAAAGCAGCCTCGCCAGTTTCATTGACCCAACCGGGTGGTTGCCGTGGGTCGGAACTTCAGCTCCGGATACTATATTTTATGCTGAATTTGCAAACTGGGGGCCGGGTTCGTCCACGGCGAAGAGAGTGAAATGGAAGGGTGTTAGGTATCTCGACAGCAATCAAGCAAGCAAATTTACGGTCTCTTCATTCCTCGGTGGATCCAAGTTCATTTCTTCGGCAACTGTTCCGTTTAAATCAGGTCTTTGA 1704 48.36 MTSSFKPYGKISEAEQAMLDARRRAQKRISVIIISSLLLIAIVVAAVLGTSAARNNSNKDGTENKPLSTSMKAVCDITLYPETCQNVFAPLINSSTNLMPNDIAKLSIRVALDELERASNKLFSQAISNSTDMLTVQALTNCQELLDLAFDHLNETLSSDKTTFLQAIADLRTWLSSAATDQQTCIDDLQEINSTLGNSFAGILKNSTELTSNSLAITTWLGKLTGSLNLRRLMSSGSEPEWMDAAARKLLESADLRKQAKIVVATDGSGKYKKINDALKAVPDKSDKRTVIYVKRGVYYENVIVDKNKWNVVVVGDGMTATIVSGSLNFVDGTPTFSSATFAVKGKGFWARDIGFRNTAGAAKHQAVALISQSDQSVFYRCHFDAFQDTLYVHSNRQFYRECNIYGTVDFIFGNSAVVIQSSNIMPKQPMQGQQNTITAQGKIDPNQNTGISIQNCLVKPYGNLGDTRTYLGRPWKNYSTTVFMQSSLASFIDPTGWLPWVGTSAPDTIFYAEFANWGPGSSTAKRVKWKGVRYLDSNQASKFTVSSFLGGSKFISSATVPFKSGL 567
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 2959618 2961414 - Conep18aG0060800.1 Cone18ag0592 457553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone18ag0592 567 Gene3D Invertase/pectin methylesterase inhibitor family protein 68 222 IPR035513 -
Cone18ag0592 567 ProSitePatterns Pectinesterase signature 2. 405 414 IPR033131 -
Cone18ag0592 567 FunFam Pectinesterase 255 567 - -
Cone18ag0592 567 SMART PMEI_2 66 217 IPR006501 GO:0004857(InterPro)
Cone18ag0592 567 SUPERFAMILY Pectin lyase-like 260 565 IPR011050 -
Cone18ag0592 567 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 70 221 IPR035513 -
Cone18ag0592 567 CDD PMEI-like_3 73 223 - -
Cone18ag0592 567 Gene3D - 256 567 IPR012334 -
Cone18ag0592 567 FunFam Pectinesterase 67 222 - -
Cone18ag0592 567 Pfam Plant invertase/pectin methylesterase inhibitor 70 217 IPR006501 GO:0004857(InterPro)
Cone18ag0592 567 NCBIfam pectinesterase inhibitor domain 39 221 IPR006501 GO:0004857(InterPro)
Cone18ag0592 567 PANTHER PECTINESTERASE 28 552 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Cone18ag0592 567 Pfam Pectinesterase 262 552 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone18ag0592 Cone-Chr18:2959618 Cone4ag0890 Cone-Chr4:6423977 7.63E-156 dispersed
Cone11ag0986 Cone-Chr11:7926614 Cone18ag0592 Cone-Chr18:2959618 3.38E-237 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone18ag0592 - - - 0.0