Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone18ag0593 ATGTCTCGCCGTGGAGGTGGCCGTGGTGGAAGAACTGAAAATCGCCGGGATCAGCCGACAATATCGTCCTCTCAGTCTTCTTCCAGTCGCGGTGGCGCTGGTGGAGGAAGAGGCCGAGGCGGTGCTCGCGGTGGACGTGGCGCCGGTAACATTGTTCCTGGTACTCAACCGGTGGCAACAACTCAGGCGGACTATCCGCCCCTAGTTGCAAAAGTATCAGCGTCTCCGGCGGCTGCTTCAACTTCTTCAACACCGTCTAGGCCGTCTACGACTCCGACGCCGGCTCCGGTGGTGAGTCCGGCGGATAATCCTCCGCAGACACAGAGTTCTGTAGATCCTGCTCCTGTTGCTGCTGTGTCTACAACAGCCTCGGCGACTGGGACTTCCTTGAGCGGTGAGGTAGAGAAGAAGCTTGTACTTCAGGCGCCTCCTCCGTCTTCGTCGAAGGCGCTGCGTTTTCCACAGAGGCCTGGATACGGTACCATCGGCACAAAAATTTTCGTTCGGGCTAATCATTTTCTAGTGGAGATTGCAGACAAGGATCTTCATCAATACGATGTGTCCATGAGTCCTGAAGTTACCTCCAAGAAAATCTGCAGAGATGTGATGAAGGAGCTTTCAAATTTGTATCGTGAGTCTCACTTGGGCGGGAGAATGTTTGCTTATGATGGTAGGAAAAGTTTATACACTGCAGGCCCACTGCCGTTTAACTTGAAGGAGTTTGTTATAAAGTTAGATAAAGATTCTGAATCTTCCAGGAGAATTCGTCAATTCAAAGTGGCTATCAAATTTGCCTCTAAGCCAGACCTGCATCATCTACAACAGTTTATAAGAGGTAGGCAGCTAGATGTACCTCAAGAGACGATTCAAGTGCTTGACGTTGTTCTTCGAGCAGCTCCATCTGAAAAGTACACAGTCATTGGGAGGTCTTTTTTTGCACCTAATTTAGGGCCAAGGGGTGAGTCTGGAAGGGGGGACCTTGGTAATGGTCTTGAATATTGGAGGGGGTTTTATCAAAGCCTTCGCCCAACTCAGATGGGATTGTCACTTAATGTTGATATCTCTGCAAGGTCTTTCTATGATCCAATTCTAGTGACGGATTTCATTAAAAAACATTTTAATTTTAGAGATACTTCAAGGCCGTTATCAGATCAAGATTGTGTTAAGATCAAGAGGGCTTTGAGAGGAGTTAGGGTGGAAGTTTCTCATCAGGGTAATTCAAGAAAATACAAAATTACTGGAGTGTCATCCCGACCTTTAAGCCAACTTACGTTCCCTTTAGAGGATAGCTCAAGGATGTCAGTTGTTAAATATTTCCGTGACAAGTATGGTGTTGTGCTTAAAGATGTGGCTCTTCCTGCTCTTCAAGCTGGAAATGATTCAAATCCTGTGTTTTTGCCTATGGAGATCTGTCAGATAGTTGCTGGACAAAGATATACAAAGAAGTTGAACGAGGGACAAATAAAATCTCTATTAACAGCAACTTGTCGGCGGCCAGATCTGAGGGAAAATGACATAAAACAGATGGTGGAGCGGAATAATTTTAATGTGGACGAGCTTGTAAGTAATGAATTCGGTATTCGAGTGAAGGAACAACTAACTTTGGTTGAGGCTCGTGTTTTACCACCTCCTATGCTCAAGTATCATGATTCAGGGAGGCAAGTAAGAGAAAACCCAAAGATGGGTGCATGGAATATGGTAAACAAGAAAATGATTGATGGTGGTCGAGTGGAATTCTGGACTTGCATTAATTTCGCTACAGGAGTGCATCCAAACTTTCCATTGGACTTTTGTGTGGAGTTGGTCAATATTTGCATGAATAAGGGAATGAGTTTCAATCTTGATCCATTGATTCCCATACGTTCTGCTAACATTGCTCAAAGTGAGAGGGCTCTTAATGAGGTGCACATGCAATCACAAGCTGAACTTAAAAGAAGGGGACAGGAGAATAAACGGCTGCAGCTTTTAATCATTATTTTTCCTGATAAAACTGGATACTATGGGACGATAAAACGAGTGTGTGAAACTGAACTTGGAATCATCACTCAGTGCTGTCTGGTTAGGGAAGCATTAAAGTTCAAGGAACAAACTCTTGTAAACTTGGCCCTTAAAATCAATGTTAAGGTTGGGGGACGAAACACTGTGTTGAATGATGCTATTCATGGAAGGATCCCTCATGTGAATGATCGCCCCACAATAATCTTCGGGGCAGATGTAACACACCCACAACCTGGGGAAGACTCTAGCCCTTCAATAGCAGCGGTTGTTGCTTCCATGGACTGGCCTGAGGTGACCAAGTACAGAGGGATTGTCGCTGCACAAGAGCACCGTCAAGAGATTATTCTAGATCTGTTCAAAACATTCCGAGATCCTCAGAAAGGAGAAGTCAGTGGAGGCATTATCAGAGAACTACTAATCGCATTCAGACGATCAACTGGTCATAAACCGCATAGGATAATATTCTACAGAGATGGAGTAAGCGAAGGACAGTTCAGTCAAGTTTTGTTTTATGAAGTGGATGCCATTAGAAAGGCATGTCAATCCCTTGAGGAGGGATATCTTCCACCTATCACCTTTGTTGTTGTGCAGAAAAGACATAATACTCGTCTCTTTCCAGACGACCCTAAGAATAAGGACCGTAGTGGCAATATACTACCAGGTACTGTGGTTGAACACAAGATTTGCCATCCTACAGAATTTGACTTTTACCTCAACAGCCATGCAGGGATTCTGGGAACAAGTCGGCCAACCCATTACCATGTGCTGTATGATGAGAACCATTTTACTGCAGATGCCTTGCAAACGCTGACAAACAACTTGTGTTACACATATGCAAGGTGCACTCGATCCGTATCAATTGTTCCTCCGGCTTATTATGCCCACTTGGCTGCTTTCCGTGCACGGTTCTACATCGAAGGCAATGCCTCAGACAGTGGATCCACAGTTGGAGTCAGAAGTTCAGAATTACGTCCTCTTCCAGCCATCATGGAACATATCAAAGACGTGATGTTCTACTGTTGA 3021 45.02 MSRRGGGRGGRTENRRDQPTISSSQSSSSRGGAGGGRGRGGARGGRGAGNIVPGTQPVATTQADYPPLVAKVSASPAAASTSSTPSRPSTTPTPAPVVSPADNPPQTQSSVDPAPVAAVSTTASATGTSLSGEVEKKLVLQAPPPSSSKALRFPQRPGYGTIGTKIFVRANHFLVEIADKDLHQYDVSMSPEVTSKKICRDVMKELSNLYRESHLGGRMFAYDGRKSLYTAGPLPFNLKEFVIKLDKDSESSRRIRQFKVAIKFASKPDLHHLQQFIRGRQLDVPQETIQVLDVVLRAAPSEKYTVIGRSFFAPNLGPRGESGRGDLGNGLEYWRGFYQSLRPTQMGLSLNVDISARSFYDPILVTDFIKKHFNFRDTSRPLSDQDCVKIKRALRGVRVEVSHQGNSRKYKITGVSSRPLSQLTFPLEDSSRMSVVKYFRDKYGVVLKDVALPALQAGNDSNPVFLPMEICQIVAGQRYTKKLNEGQIKSLLTATCRRPDLRENDIKQMVERNNFNVDELVSNEFGIRVKEQLTLVEARVLPPPMLKYHDSGRQVRENPKMGAWNMVNKKMIDGGRVEFWTCINFATGVHPNFPLDFCVELVNICMNKGMSFNLDPLIPIRSANIAQSERALNEVHMQSQAELKRRGQENKRLQLLIIIFPDKTGYYGTIKRVCETELGIITQCCLVREALKFKEQTLVNLALKINVKVGGRNTVLNDAIHGRIPHVNDRPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVTKYRGIVAAQEHRQEIILDLFKTFRDPQKGEVSGGIIRELLIAFRRSTGHKPHRIIFYRDGVSEGQFSQVLFYEVDAIRKACQSLEEGYLPPITFVVVQKRHNTRLFPDDPKNKDRSGNILPGTVVEHKICHPTEFDFYLNSHAGILGTSRPTHYHVLYDENHFTADALQTLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYIEGNASDSGSTVGVRSSELRPLPAIMEHIKDVMFYC 1006
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 2966035 2972722 + Conep18aG0060900.1 Cone18ag0593 457554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone18ag0593 1006 CDD PAZ_argonaute_like 365 474 - -
Cone18ag0593 1006 Gene3D - 540 718 - -
Cone18ag0593 1006 MobiDBLite consensus disorder prediction 102 129 - -
Cone18ag0593 1006 ProSiteProfiles PAZ domain profile. 364 475 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Cone18ag0593 1006 Pfam Argonaute linker 2 domain 502 548 IPR032472 -
Cone18ag0593 1006 Pfam Argonaute linker 1 domain 307 360 IPR014811 -
Cone18ag0593 1006 MobiDBLite consensus disorder prediction 1 15 - -
Cone18ag0593 1006 Pfam PAZ domain 367 488 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Cone18ag0593 1006 Pfam Mid domain of argonaute 558 631 IPR032473 -
Cone18ag0593 1006 Pfam Piwi domain 656 971 IPR003165 GO:0003676(InterPro)
Cone18ag0593 1006 SUPERFAMILY PAZ domain 166 516 IPR036085 GO:0005515(InterPro)
Cone18ag0593 1006 Gene3D paz domain 357 479 - -
Cone18ag0593 1006 CDD Piwi_ago-like 523 971 IPR045246 -
Cone18ag0593 1006 FunFam protein argonaute 10-like 723 1006 - -
Cone18ag0593 1006 SMART PAZ_2_a_3 367 500 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Cone18ag0593 1006 MobiDBLite consensus disorder prediction 16 32 - -
Cone18ag0593 1006 MobiDBLite consensus disorder prediction 1 129 - -
Cone18ag0593 1006 FunFam Argonaute 10 540 717 - -
Cone18ag0593 1006 SMART Piwi_a_2 655 972 IPR003165 GO:0003676(InterPro)
Cone18ag0593 1006 ProSiteProfiles Piwi domain profile. 655 972 IPR003165 GO:0003676(InterPro)
Cone18ag0593 1006 Pfam N-terminal domain of argonaute 165 296 IPR032474 -
Cone18ag0593 1006 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 156 972 - GO:0003723(PANTHER)|GO:0004521(PANTHER)|GO:0005737(PANTHER)|GO:0035194(PANTHER)
Cone18ag0593 1006 SMART DUF1785_2 305 362 IPR014811 -
Cone18ag0593 1006 Gene3D - 724 1006 IPR036397 GO:0003676(InterPro)
Cone18ag0593 1006 SUPERFAMILY Ribonuclease H-like 650 972 IPR012337 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag1340 Cone-Chr11:9820671 Cone18ag0593 Cone-Chr18:2966035 1.95E-152 dispersed
Cone18ag0238 Cone-Chr18:1166908 Cone18ag0593 Cone-Chr18:2966035 0 dispersed
Cone18ag0593 Cone-Chr18:2966035 Cone18ag0900 Cone-Chr18:6382469 0 dispersed
Cone18ag0593 Cone-Chr18:2966035 Cone11ag0605 Cone-Chr11:3730042 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone18ag0593 K11593 - rcu:8275276 1216.45