Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone18ag0594 ATGATGAACTCAATGGAAATCTTCGAAGAAATGGGCTTTTATGGTAATCTTGAGTTTCTTCAAGCTGCCCCTCTTGAGCAAAGGGAAGCGGCTCAAGAGCATGAATCAAAGGTGGTGGTGATGGGTGAAGAGGGTTATAGTGATGAAGAATCAGTAGATGTTGAGGAGCTTGAGAGAAGAATGTGGAGAGACCGGATTCTCTACAGCCGGTTCAAAGAACGGAAAAAGGGAGGCCAAGAGGTTGGAGTGAGTGATTGTGCAAAGAGGAAACATCAATCCCAAGATCAAGCCCAGAGGAAAAAGATGTCAAGGGCACAATATGGTATTTTAAAATACATGCTCAAAATGATGGAGGTTTGTAATGCTCAAGGTTTTGTTTATGGAATTATCCCTGAGAAAGGAAAGCCGGTTACTGGTGCCTCGGATAATCTCCGTGCCTGGTGGAAGGAAAAGGTCCGATTTGATCGCAATGGGCCCGCTGCAATCTCCAAGTACGATCTGGACCATTCGATTTCAATTCCAGGAAAGACTTCTGCTGATGTAGAGGCATCGATTTCTCGAAACTTACAAGAGCTCCAAGACACTACTTTAGGATCGCTTCTATCAGCTTTAATGCAGCACTGTGACCCACCCCAGAGGCGGTTTCCATTGGAGAAGGGTGTTGCTCCACCGTGGTGGCCCACAGGAAATGAGGAATGGTGGTCGTCTGAAGTAGGTTTTTTGCCGAACAATGATCAAGGACCTCCTCCTTATAAGAAGCCTCATGATCTAAAGAAGGCTTGGAAGGTTAGTGTTCTTACGGCTGTTATCAAACATATTTCCCCTGATACTGCCAAGATCAGAAAGCTTATTCTTCAGTCAAAATGTCTTCAGGACAAAATGACTGCCAAAGAGAGTGCCACTTGGCTTGCTATAGTAAACCAGGAAGAAGCTTTGGCCCGTAAGTTATATCCCTATAAATTCCCAGCTGAAATAGCGCCTCTTGGGTCTGACTCTCTTATGATTGGTAACACTAGTGATTATGATGTTGAAGGTGTTAAGGAATGCGAGCCTTCTTGTAATAAAGGTCTTTTCGATGCAATGATGCCATTATTGGGTCCCCAAATTAAAGGAGAGGTCTTAGAGACTGATATATCGGATTTTGGCTTGAAGCGGAAGAAGGTGGGTGATGAGAGAGACCATATAATGGTGGGTCCAACTCAAAAAACATATTATACATGTGAGAATTCTCAATGCCCTTATAATGATCTCCGTCTTGGGTTTCCAGACAGGAATTATAGAAACATCCACCAACAGAATTGTCCATTTCGGACTACTTCTGCCCAAAATCTTGCAATATCAAATTTTAACATAACAATTGACCAAGCTCCGAATTATAGCGTTAAGGGACTTGGGCTGATTCCAGAAGATGGGCAGAAAATGATATCGGATCTGATGACATTCTATGACAGTAATCTCCAAAGGAACGAAAACTTCAATCAAGTGAATCTTGATGATACTGACGGTCAGAATCAAAGGCAGCAAAACTTTCAACTTGATCGGATGGACGGGAATTTTTACAGGCAGGAAGGAATTATGGTAGGAGGTGGCTTGTATACTAATTTTCCATCAATTCAGTTTGATCAGCATAACTCATACAACTTGGAAGACACCTCCATCTGGTACCATTGA 1671 42.79 MMNSMEIFEEMGFYGNLEFLQAAPLEQREAAQEHESKVVVMGEEGYSDEESVDVEELERRMWRDRILYSRFKERKKGGQEVGVSDCAKRKHQSQDQAQRKKMSRAQYGILKYMLKMMEVCNAQGFVYGIIPEKGKPVTGASDNLRAWWKEKVRFDRNGPAAISKYDLDHSISIPGKTSADVEASISRNLQELQDTTLGSLLSALMQHCDPPQRRFPLEKGVAPPWWPTGNEEWWSSEVGFLPNNDQGPPPYKKPHDLKKAWKVSVLTAVIKHISPDTAKIRKLILQSKCLQDKMTAKESATWLAIVNQEEALARKLYPYKFPAEIAPLGSDSLMIGNTSDYDVEGVKECEPSCNKGLFDAMMPLLGPQIKGEVLETDISDFGLKRKKVGDERDHIMVGPTQKTYYTCENSQCPYNDLRLGFPDRNYRNIHQQNCPFRTTSAQNLAISNFNITIDQAPNYSVKGLGLIPEDGQKMISDLMTFYDSNLQRNENFNQVNLDDTDGQNQRQQNFQLDRMDGNFYRQEGIMVGGGLYTNFPSIQFDQHNSYNLEDTSIWYH 556
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 2981687 2985217 + Conep18aG0061000.1 Cone18ag0594 457555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone18ag0594 556 MobiDBLite consensus disorder prediction 79 100 - -
Cone18ag0594 556 FunFam Ethylene insensitive 3-like 1 180 320 - -
Cone18ag0594 556 SUPERFAMILY DNA-binding domain of EIN3-like 188 313 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Cone18ag0594 556 Gene3D - 185 320 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Cone18ag0594 556 FunFam Ethylene insensitive 3-like 1 91 169 - -
Cone18ag0594 556 MobiDBLite consensus disorder prediction 79 98 - -
Cone18ag0594 556 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 14 510 IPR006957 GO:0003677(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(InterPro)
Cone18ag0594 556 Pfam Ethylene insensitive 3, DNA-binding domain 55 310 IPR047091 GO:0003700(InterPro)
Cone18ag0594 556 Gene3D - 91 173 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone18ag0594 Cone-Chr18:2981687 Cone5ag0446 Cone-Chr5:1893514 1.95E-196 dispersed
Cone11ag0985 Cone-Chr11:7920393 Cone18ag0594 Cone-Chr18:2981687 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45170 PF03330 DPBB_1 9.80E-21 CL0199 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone18ag0594 K14514 - vvi:100250496 621.313