Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone18ag0616 ATGGACGATGAAACAGAGCAGAAAAACCACGACACAAAAAATCAAACCCGAAACATCCTCCTCGGAAAATACGAGATGGGGAGATTACTGGGCCAAGGAACGTTCGCGAAAGTCTACTACGGCAAGAACATAATCACCCATGAAAGCGTCGCCATTAAAGTGATCAACAAAGATCAGGTAAAGAAAGATGGATTAATGGAGCAAATCAAGCGGGAAATCTCCGTCATGCGGTTGGTCCATCATCCCAACATCGTGGAGCTGAAAGAAGTCATGGCCACTAAGAGCAAGGTCTTCTTCATCATGGAATACATTAATGGAGGCGAACTGTTCGAGAAAATTACCAAGAGAAAGAAACTCGAGGAAGAAACCGCAAGAAAGTACTTCCGACAATTAATCAGCGCTGTCGAGTTCTGCCATAGCAGAGGCGTATCCCATCGCGATTTAAAACCTGAAAACCTCCTCCTCGACCAGAACGGAGACCTTAAAGTCTCCGATTTCGGCTTATCGGCTTTACCTGAAAGTTTAAGGATTGATGGTTTGCTTCATACACAGTGTGGGACTCCTGCTTATGTTGCTCCTGAGATATTAAGGAAAAAAGGTTATGATGGAGCTAAGGCTGATATATGGTCTTGTGGGGTTATACTATTCGTTTTACTTTCTGGCTATTTACCGTTTCGGGCCGATAATATCATGAAGATGTATCGGAAAGTTTTCAAGGGGGAGTATGAGTTTCCTCCATGGCTTTCTTGTGATGCAAAGAGCTTGATCTCTAAGTTGCTAGTTGTAGATCCTGATAAACGAATTTCGATATCAGATATAAGGAAAAGTACTTGGTTTCGACATGGAGTTATTAGTAGTAGTACTACTAATCAGAATCAAGAAGTAGTAATTGGAGATATAAGTAATAACGAAGATTTGGAATTGGTCATGAAATCATCATCAGCACCATTTTATAATGCGTTTGAGTTCATAGCTTCAATGTCAACCGGGTTTGACTTGTCGAGCTTGTTCGAGAGTAAGAAGAAATGCAGGTCAATATTTATGTCAAAATGTTCGGCTTCGACTATTTTGGCGAAGCTTAAGGGCTTGGGGAAGAAGTTTAGTTTGACAGAATGTAGTTTAAAGGATTATAAGGTGAAGATAGTGGGGAAAGATGAAGGGAGGAAAGGGAGGTTGGAGGTGGTGGCGGAGGTGTTTGAAGTGGCGGCAGAAGTGGCGGTGGTCGAGTTTTCTAAGGTGGCCGGAGATACTATGGAGTATGTTAATTTTTGTGAGGATGTTAGACCTGCACTTAAGGATATTGTTTGGAGTTGGCAAGGTGAAATTAATAGTTGTTCGTAA 1341 41.83 MDDETEQKNHDTKNQTRNILLGKYEMGRLLGQGTFAKVYYGKNIITHESVAIKVINKDQVKKDGLMEQIKREISVMRLVHHPNIVELKEVMATKSKVFFIMEYINGGELFEKITKRKKLEEETARKYFRQLISAVEFCHSRGVSHRDLKPENLLLDQNGDLKVSDFGLSALPESLRIDGLLHTQCGTPAYVAPEILRKKGYDGAKADIWSCGVILFVLLSGYLPFRADNIMKMYRKVFKGEYEFPPWLSCDAKSLISKLLVVDPDKRISISDIRKSTWFRHGVISSSTTNQNQEVVIGDISNNEDLELVMKSSSAPFYNAFEFIASMSTGFDLSSLFESKKKCRSIFMSKCSASTILAKLKGLGKKFSLTECSLKDYKVKIVGKDEGRKGRLEVVAEVFEVAAEVAVVEFSKVAGDTMEYVNFCEDVRPALKDIVWSWQGEINSCS 446
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 3122230 3123941 - Conep18aG0063200.1 Cone18ag0616 457577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone18ag0616 446 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 9 429 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Cone18ag0616 446 ProSiteProfiles NAF domain profile. 313 338 IPR018451 GO:0007165(InterPro)
Cone18ag0616 446 FunFam Non-specific serine/threonine protein kinase 15 103 - -
Cone18ag0616 446 Pfam Protein kinase domain 24 279 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone18ag0616 446 CDD CIPK_C 319 432 - -
Cone18ag0616 446 Gene3D Kinase associated domain 1, KA1 313 437 - -
Cone18ag0616 446 SUPERFAMILY Protein kinase-like (PK-like) 20 317 IPR011009 -
Cone18ag0616 446 ProSiteProfiles Protein kinase domain profile. 24 279 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone18ag0616 446 Gene3D Phosphorylase Kinase; domain 1 12 103 - -
Cone18ag0616 446 ProSitePatterns Serine/Threonine protein kinases active-site signature. 143 155 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone18ag0616 446 FunFam Non-specific serine/threonine protein kinase 17 314 - -
Cone18ag0616 446 ProSitePatterns Protein kinases ATP-binding region signature. 30 53 IPR017441 GO:0005524(InterPro)
Cone18ag0616 446 FunFam Non-specific serine/threonine protein kinase 313 436 - -
Cone18ag0616 446 Pfam NAF domain 317 369 IPR004041 GO:0007165(InterPro)
Cone18ag0616 446 Gene3D Transferase(Phosphotransferase) domain 1 104 284 - -
Cone18ag0616 446 SMART serkin_6 24 279 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0986 Cone-Chr17:7606899 Cone18ag0616 Cone-Chr18:3122230 3.09E-199 dispersed
Cone18ag0616 Cone-Chr18:3122230 Cone20ag0325 Cone-Chr20:1450077 6.56E-196 dispersed
Cone11ag0951 Cone-Chr11:7758593 Cone18ag0616 Cone-Chr18:3122230 9.80E-283 wgd
Cone18ag0616 Cone-Chr18:3122230 Cone4ag0285 Cone-Chr4:1311433 2.25E-101 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82318 PF00676 E1_dh 9.90E-65 CL0254 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone18ag0616 - - - 0.0