Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone18ag0617 ATGGCTTATTCTCCATGGGTAGATACTTCATTACATCTCAACCTCAAACCTCTCCGACATGTTAACGACATTCGGCCAATTAAGAAGGTGGAAAGCAAATCTCTACATTTTGAGAGGAAAATTTCAGTGAAAGACGAGAGTGGTGCGTTGGAGGAGGAATTGAAGAGGGTGAATGAGGAAAACAAGAGGCTGACGGAAAAACTAACGGTGATGTGTGAAAAGTACAACGCTTTGAGGAAACATTTGATGGATTACATGAACAAAAATCCTGATCAGAAGGAGCTTGTAGTAAGCTCAACGAAGAAAAGAAAATCAGAAAGCAGCAATAATGATAGTATTAGTAATCATGTTGTAGGGATTATCAGTAGTAACGGTAATTCAGAGAACAGTTCCACTGATCATGAAGATACATGCAAGATATTACAAAGAGAAGAGAGCATTAAAAGCAAGATCACAACTGCTTACGTTCGGATCGAACCGTCCGATACAACCCTTGTAGTGAAAGATGGATACCAATGGAGGAAATATGGGCAGAAGGTGACTAGAGATAATCCTTGTCCTAGAGCTTATTTCAAGTGCTCTTTTGCTCCAAGCTGCCCTGTGAAAAAGAAGGTGCAAAAAAGTGTAGAAGATCAATGTGTTTTAGTTGCAACTTATGAAGGTGAACACAATCATCCGCCTCCATCTCAACTTGACCATCAAGCAAATTCAAGCTCAACTAGGAGTAGTACCGTGACACTTAGCGGCTCGATTAATCCTTTTTCGATCTCCACAAACGGCGGATCATCAGCACCGTCAAATATTATTCTTGATTTGATAAACTCAAAGTCAAAGTCAAATCCGAGGAGCTATCATACGTCTGAGGTGCAGAAGTTTTTGGTAGAGCAAATGGCTTCTTCATTGACAAAAGATCCGCAGTTTACTGCGGCTTTGGCCGCGGCTATTTCCAGATGA 954 40.88 MAYSPWVDTSLHLNLKPLRHVNDIRPIKKVESKSLHFERKISVKDESGALEEELKRVNEENKRLTEKLTVMCEKYNALRKHLMDYMNKNPDQKELVVSSTKKRKSESSNNDSISNHVVGIISSNGNSENSSTDHEDTCKILQREESIKSKITTAYVRIEPSDTTLVVKDGYQWRKYGQKVTRDNPCPRAYFKCSFAPSCPVKKKVQKSVEDQCVLVATYEGEHNHPPPSQLDHQANSSSTRSSTVTLSGSINPFSISTNGGSSAPSNIILDLINSKSKSNPRSYHTSEVQKFLVEQMASSLTKDPQFTAALAAAISR 317
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 3133849 3135265 + Conep18aG0063300.1 Cone18ag0617 457578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone18ag0617 317 MobiDBLite consensus disorder prediction 220 246 - -
Cone18ag0617 317 MobiDBLite consensus disorder prediction 89 136 - -
Cone18ag0617 317 Coils Coil 40 74 - -
Cone18ag0617 317 MobiDBLite consensus disorder prediction 95 109 - -
Cone18ag0617 317 MobiDBLite consensus disorder prediction 229 246 - -
Cone18ag0617 317 FunFam WRKY transcription factor 40 152 229 - -
Cone18ag0617 317 Pfam WRKY DNA -binding domain 168 226 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone18ag0617 317 SUPERFAMILY WRKY DNA-binding domain 163 228 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone18ag0617 317 Gene3D WRKY domain 150 229 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone18ag0617 317 MobiDBLite consensus disorder prediction 110 131 - -
Cone18ag0617 317 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 35 316 IPR044810 GO:0003700(InterPro)
Cone18ag0617 317 SMART WRKY_cls 167 227 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone18ag0617 317 ProSiteProfiles WRKY domain profile. 162 228 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0272 Cone-Chr17:1288799 Cone18ag0617 Cone-Chr18:3133849 2.55E-80 dispersed
Cone18ag0617 Cone-Chr18:3133849 Cone20ag1141 Cone-Chr20:7768393 4.88E-80 dispersed
Cone11ag0950 Cone-Chr11:7747844 Cone18ag0617 Cone-Chr18:3133849 1.10E-173 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45173 PF00892 EamA 3.10E-11 CL0184 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone18ag0617 - - - 0.0