Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone18ag0620 ATGATAATCAACGTGAAGGAATCGACGATGGTGAAGCCATCAGGAGAGACACCCAAACGGAGTTTATGGAATTCGAACGTGGATATAGTGGTGCCGAGCATGCATACTCCGAGTGTATATTTCTACACACCAACTGGTTCGCCCAATTTCTTTGATTCTAGGGTTCTTAAGGAGGCGCTTAGTAAGGCCCTGGTGCCGTTTTACCCCATGGCTGGTCGATTGAAGAGAGATGAAGACGGTCGAATTGAGATTGATTGTAATGCAGAAGGAGTGCTGCTTGTTGAAGCTGAGACCAGTACTGTTGTTGATGATTTTGGCGATTTTGCGCCAACTTTGAAGCTCAGGCAGCTTATTCCTACTGTGGATTATTCTCGTGGGATTGAGTCCTATCCTCTCTTGATCTTGCAGGTTACTCACTTCAAATGTGGCGGGGTCTCACTTGGTGTTGGAATGCAACACCATGCAGCAGATGGATTCTCCGGTCTTCATTTCATAAACACATGGTCCGATATGGCTCGTGGGCTCGACTTAACAATACCTCCTTTCATCGACCGGACTCTCCTCCGAGCCCAGGACCCACCTCAACCTTCATTCGAACACATTGAATATCAACCGGCCCCCACCATGAACGCCCCCCTACAAGGATCAAATCCAGAGGACACAACAGTCTCCATATTCAAAATGACCCGAGACCAGCTCAACATCTTGAAGGCCAAGTCCAAGGAAAACGGCAACACAATAAATTACAGCTCATACGAGATGTTATCGGGGCATGTGTGGAGATGTGTATGCAAGGCCCGTGGGCTCCCGGACGATCAAGTAACAAAGTTGTACATCGCAACGGATGGACGGTCCAGATTGCGTCCTCCTCTCCCGCCCGGTTACTTTGGCAATGTGATCTTCACCACTACACCTATAGCATTAGCAGGTGATTTGCAGTCGAAACCGACCTGGTATGCTGCAAGTAGGATCCATGATGCATTGAAGAGGATGGATGATGAGTACTTGAAATCGGCCCTTGATTATCTGGAGCTACAGCCTGATCTCTCGGCTCTTGTTCGTGGGGCCCATACCTTTAGGTGCCCGAACCTTGGGATTACTAGCTGGGTTAGGCTGCCTATCCATGATGCTGATTTTGGGTGGGGTCGGCCGATTTTTATGGGACCCGGTGGGATTGCTTATGAGGGTCTATCGTTTATGATACCTAGTCCTACTGACGATGGGAGCCTGTCGGTGGCCCTTTGCCTGCAAACTGAACACATGAAAGCGTTTGAGAAATTGTTGTATGAAATCTAA 1296 48.61 MIINVKESTMVKPSGETPKRSLWNSNVDIVVPSMHTPSVYFYTPTGSPNFFDSRVLKEALSKALVPFYPMAGRLKRDEDGRIEIDCNAEGVLLVEAETSTVVDDFGDFAPTLKLRQLIPTVDYSRGIESYPLLILQVTHFKCGGVSLGVGMQHHAADGFSGLHFINTWSDMARGLDLTIPPFIDRTLLRAQDPPQPSFEHIEYQPAPTMNAPLQGSNPEDTTVSIFKMTRDQLNILKAKSKENGNTINYSSYEMLSGHVWRCVCKARGLPDDQVTKLYIATDGRSRLRPPLPPGYFGNVIFTTTPIALAGDLQSKPTWYAASRIHDALKRMDDEYLKSALDYLELQPDLSALVRGAHTFRCPNLGITSWVRLPIHDADFGWGRPIFMGPGGIAYEGLSFMIPSPTDDGSLSVALCLQTEHMKAFEKLLYEI 431
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 3179951 3183054 + Conep18aG0063600.1 Cone18ag0620 457581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone18ag0620 431 Gene3D - 212 431 IPR023213 -
Cone18ag0620 431 FunFam Tryptamine hydroxycinnamoyl transferase 208 429 - -
Cone18ag0620 431 FunFam Spermidine hydroxycinnamoyl transferase 1 203 - -
Cone18ag0620 431 Pfam Transferase family 3 427 - -
Cone18ag0620 431 Gene3D - 1 205 IPR023213 -
Cone18ag0620 431 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 4 422 IPR050317 GO:0016747(PANTHER)
Cone18ag0620 431 SUPERFAMILY CoA-dependent acyltransferases 199 388 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0237 Cone-Chr13:1561716 Cone18ag0620 Cone-Chr18:3179951 2.66E-87 dispersed
Cone16ag0306 Cone-Chr16:3546339 Cone18ag0620 Cone-Chr18:3179951 1.31E-105 dispersed
Cone16ag1011 Cone-Chr16:9832764 Cone18ag0620 Cone-Chr18:3179951 8.10E-88 dispersed
Cone18ag0620 Cone-Chr18:3179951 Cone2ag0030 Cone-Chr2:175206 1.35E-82 dispersed
Cone10ag0527 Cone-Chr10:2430458 Cone18ag0620 Cone-Chr18:3179951 2.89E-78 transposed
Cone18ag0631 Cone-Chr18:3256509 Cone18ag0620 Cone-Chr18:3179951 1.98E-293 transposed
Cone11ag0944 Cone-Chr11:7705382 Cone18ag0620 Cone-Chr18:3179951 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone18ag0620 K13065 - cit:102624577 748.043