Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone18ag0623 ATGGAGAAGAAGAAGTATCCCGTAGGAGCAGAGCATTATACTCTGCATGAAGAGATCGGGCAGGGTGTGAGTGGCTCGGTGCACCGAGCTCTCTGTAAACCTTATGACGAGATAGTCGCCATTAAGATCCTTGATTTGGAGCGTGCTGATTGTGATCTGTTCAACATTTCCCGAGAAGCACAAACGATGATCATGGTTGACCATCCTAACGTGCTTAAATGCCACTGTTCCTTTGTTAGTGACTATAGTCTGTGGATTGTTATGCCCTACATGTCTGGAGGCTCGTGTCTACACATTTTAAAAGCCGCATACCCGACTGGTTTTGGGGAGGTGGTTATAGCAACAATATTGAAGGAGGTATTAAAGGGTTTAGAGTATCTTCATAATCAGGGACACATACATCGGGATGTCAAAGCCGGGAATATACTCATTGGCTCCCGTGGTACGGTCAAGCTGGGGGATTTTGGGGTTTCTTGTTGCCTTTTTGATTCGTGCGATAGGCATCGCATGAGGAATACATTTGTGGGGACACCTTGCTGGATGGCGCCTGAGGTTATGGAGCAGCTACATGGTTATGATTTCAAAGCGGACATCTGGTCTTTTGGAATAACTGCTTTAGAGCTCGCCCGTGGCAATGCGCCTTTCTCACAGTATCCCCCAATGAAGGTTCTTCTGATGACTCTACAGAATGCTCCTCCAGGTCTTGATTATGAAAGGGATCGGAAATATTCAAAGCATTTTAAGCAGATGATTGCTATTTGCTTGGTAAAAGACCCTGTAAAACGCCCTTCTGCAAAGAAATTGCTAAAGCATCCTTTCTTCAAGCAAGCCAAGTCAAATGATTATATTGTGCGTACCCTTTTGGAGGGCCTACCAAATCTTGGCGATCGCATTAAGGCATTGAAGAAAAAAGAGGAAGATATGGTAGCTCAGAAGAAAATGCCTGATGGGGAGAAGGAGGAAATATCACAGAATGAATATAAACGAGGAATTAGTGTGTGGAACTTCGATCTTGAAGATGTAAAGGCTCAGGCATCCCTGATCCAAGATAATGATGACATGATATCTAGCTCAAATTCCTTTGTTATACTTGATGGGGAAGAAAAAACTTCACAATGTCAAAGCTCCTCTCAAGCTGCAGATTCGGAGTGGAATGATAAGATGCCAAATCAAGCAGTTCCTCTTCCCTCGGTTGACCCGACGTCTAATGATATGAAGTCATATCATGAGGACCGTACTATGCTTAATTCTTCTCCCAAGCATGATGCTCGCGCTGGAAATAGTTCATCTGAAATACAGGAATTGGAGTTCAGTGGAGGAACTTTAGAGTGTGCAGCCAGTTCTAGTGATCAACAAAATAATGTTTCAGCCGGAGGCACATTACTAGAAGTTTCTGTTTCACCTACTAAAAGAGACAGAGATAAGTTGCAAAATCAGCTACAGAACATCCCAAATTGCAGTTCTTCTACTCTTCCACAAGCAGTGGATGATATGCCTTCTGAAGTTTCTTCTTCAAGTAGTAGTGAACTTGATGAGAAGGGAAGGTCACCAGTTGTGCAACAGAAAGGGCGTTTCAAAGTTACATCTGAGAATGTTAGCATAGAAAAGGTGGCCCCTACTCCTATACTCCTTAAGAGTCAGAGCATGCAGGTGATAACTACTCCGTATTCCACAATTTCCAATCCTTCAACTCCGCTACTCTCACCTCTACCTTCACCATCTGCTAGGACATCAACTCTTTCTGGCCCTTCTACTTTTCACCTGTTGCATTCTATTTTGCAGTCAAATATTAATCAGGGGGAGAATATTTTAAGCATAATGAAGCATGTTGCTACTCTGGGCGACTTTGCAGTCAAAGCAGGATGTTCGGCATCTCATGTTGCAGCGGTGGAGAAATCTTTGCTTGAAGCAGCTCATGACCGGGAAACACAATTACTTAATGAAATAACCGATTTGCAGTCGAGGCTCACAAGTGCCCAAGCTGAGCTTCAAAAATTAAGAACAGAAAACACTAAAGGTTAA 2022 43.32 MEKKKYPVGAEHYTLHEEIGQGVSGSVHRALCKPYDEIVAIKILDLERADCDLFNISREAQTMIMVDHPNVLKCHCSFVSDYSLWIVMPYMSGGSCLHILKAAYPTGFGEVVIATILKEVLKGLEYLHNQGHIHRDVKAGNILIGSRGTVKLGDFGVSCCLFDSCDRHRMRNTFVGTPCWMAPEVMEQLHGYDFKADIWSFGITALELARGNAPFSQYPPMKVLLMTLQNAPPGLDYERDRKYSKHFKQMIAICLVKDPVKRPSAKKLLKHPFFKQAKSNDYIVRTLLEGLPNLGDRIKALKKKEEDMVAQKKMPDGEKEEISQNEYKRGISVWNFDLEDVKAQASLIQDNDDMISSSNSFVILDGEEKTSQCQSSSQAADSEWNDKMPNQAVPLPSVDPTSNDMKSYHEDRTMLNSSPKHDARAGNSSSEIQELEFSGGTLECAASSSDQQNNVSAGGTLLEVSVSPTKRDRDKLQNQLQNIPNCSSSTLPQAVDDMPSEVSSSSSSELDEKGRSPVVQQKGRFKVTSENVSIEKVAPTPILLKSQSMQVITTPYSTISNPSTPLLSPLPSPSARTSTLSGPSTFHLLHSILQSNINQGENILSIMKHVATLGDFAVKAGCSASHVAAVEKSLLEAAHDRETQLLNEITDLQSRLTSAQAELQKLRTENTKG 673
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 3194144 3199412 - Conep18aG0063900.1 Cone18ag0623 457584

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone18ag0623 673 MobiDBLite consensus disorder prediction 478 514 - -
Cone18ag0623 673 SMART serkin_6 13 274 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone18ag0623 673 MobiDBLite consensus disorder prediction 420 436 - -
Cone18ag0623 673 FunFam serine/threonine-protein kinase BLUS1 isoform X1 94 327 - -
Cone18ag0623 673 Coils Coil 635 669 - -
Cone18ag0623 673 MobiDBLite consensus disorder prediction 404 418 - -
Cone18ag0623 673 MobiDBLite consensus disorder prediction 367 385 - -
Cone18ag0623 673 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 1 671 IPR047173 GO:0043539(InterPro)
Cone18ag0623 673 Gene3D Phosphorylase Kinase; domain 1 2 89 - -
Cone18ag0623 673 MobiDBLite consensus disorder prediction 367 436 - -
Cone18ag0623 673 FunFam Serine/threonine-protein kinase BLUS1 2 90 - -
Cone18ag0623 673 MobiDBLite consensus disorder prediction 478 523 - -
Cone18ag0623 673 SUPERFAMILY Protein kinase-like (PK-like) 11 275 IPR011009 -
Cone18ag0623 673 CDD STKc_OSR1_SPAK 11 274 - -
Cone18ag0623 673 ProSitePatterns Protein kinases ATP-binding region signature. 19 42 IPR017441 GO:0005524(InterPro)
Cone18ag0623 673 Pfam Protein kinase domain 13 274 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone18ag0623 673 ProSiteProfiles Protein kinase domain profile. 13 274 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone18ag0623 673 Gene3D Transferase(Phosphotransferase) domain 1 94 328 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone18ag0623 K08835 - - gmx:100780339 795.808
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0279 Cone-Chr17:1338830 Cone18ag0623 Cone-Chr18:3194144 1.16E-248 dispersed
Cone18ag0623 Cone-Chr18:3194144 Cone20ag1129 Cone-Chr20:7711788 2.01E-251 dispersed
Cone11ag0941 Cone-Chr11:7685584 Cone18ag0623 Cone-Chr18:3194144 0 wgd
Cone18ag0623 Cone-Chr18:3194144 Cone4ag0275 Cone-Chr4:1234844 1.01E-10 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone14ag1056 . 1 681 MAP Kinase Kinase Kinase Kinase AT1G53165 60.0 4.4e-211 731.9
Cone9ag0187 . 1 687 MAP Kinase Kinase Kinase Kinase AT1G53165 59.1 2.7e-208 722.6
Cone6ag0161 . 9 685 MAP Kinase Kinase Kinase Kinase AT1G53165 58.8 6.1e-205 711.4
Cone13ag0901 . 259 515 MAP Kinase Kinase Kinase Kinase AT1G53165 53.1 2.4e-68 257.7
Cone19ag0899 . 260 516 MAP Kinase Kinase Kinase Kinase AT1G53165 53.1 2.4e-68 257.7
Cone9ag0187 . 1 686 MAP Kinase Kinase Kinase Kinase AT3G15220 61.8 2.5e-222 769.2
Cone14ag1056 . 1 680 MAP Kinase Kinase Kinase Kinase AT3G15220 61.3 4.7e-221 765.0
Cone6ag0161 . 9 684 MAP Kinase Kinase Kinase Kinase AT3G15220 61.5 1.3e-218 756.9
Cone13ag0901 . 260 515 MAP Kinase Kinase Kinase Kinase AT3G15220 52.5 5.4e-68 256.5
Cone19ag0899 . 261 516 MAP Kinase Kinase Kinase Kinase AT3G15220 52.5 5.4e-68 256.5
Cone13ag0901 . 1 833 MAP Kinase Kinase Kinase Kinase AT1G69220 60.1 1.1e-248 857.1
Cone19ag0899 . 8 834 MAP Kinase Kinase Kinase Kinase AT1G69220 59.1 2.0e-247 852.8
Cone6ag0161 . 23 271 MAP Kinase Kinase Kinase Kinase AT1G69220 53.2 2.2e-68 258.1
Cone9ag0187 . 23 271 MAP Kinase Kinase Kinase Kinase AT1G69220 52.4 2.2e-68 258.1
Cone14ag1056 . 23 267 MAP Kinase Kinase Kinase Kinase AT1G69220 52.4 9.2e-67 252.7
Cone18ag1363 . 3 663 MAP Kinase Kinase Kinase Kinase AT5G14720 66.6 3.7e-247 851.7
Cone11ag0114 . 19 679 MAP Kinase Kinase Kinase Kinase AT5G14720 66.3 7.0e-246 847.4
Cone8ag0549 . 8 724 MAP Kinase Kinase Kinase Kinase AT4G24100 64.5 4.4e-246 848.2
Cone12ag0550 . 8 723 MAP Kinase Kinase Kinase Kinase AT4G24100 64.4 6.4e-245 844.3
Cone12ag0550 . 11 724 MAP Kinase Kinase Kinase Kinase AT4G10730 65.7 5.3e-249 857.8
Cone8ag0549 . 11 725 MAP Kinase Kinase Kinase Kinase AT4G10730 65.8 1.2e-248 856.7
Cone20ag1129 . 4 368 MAP Kinase Kinase Kinase Kinase AT1G70430 60.5 4.0e-128 456.1
Cone17ag0279 . 4 348 MAP Kinase Kinase Kinase Kinase AT1G70430 62.9 2.0e-127 453.8
Cone18ag0623 . 4 479 MAP Kinase Kinase Kinase Kinase AT1G70430 50.6 6.4e-126 448.7
Cone11ag0941 . 4 407 MAP Kinase Kinase Kinase Kinase AT1G70430 55.4 7.1e-125 445.3
Cone12ag0550 . 5 353 MAP Kinase Kinase Kinase Kinase AT1G70430 58.5 8.4e-118 421.8
Cone8ag0549 . 5 367 MAP Kinase Kinase Kinase Kinase AT1G70430 55.9 8.7e-115 411.8
Cone17ag0279 . 1 631 MAP Kinase Kinase Kinase Kinase AT1G79640 59.1 7.0e-206 714.5
Cone20ag1129 . 1 631 MAP Kinase Kinase Kinase Kinase AT1G79640 58.1 2.0e-205 713.0
Cone18ag0623 . 1 655 MAP Kinase Kinase Kinase Kinase AT1G79640 57.8 1.3e-204 710.3
Cone11ag0941 . 1 655 MAP Kinase Kinase Kinase Kinase AT1G79640 57.5 2.8e-199 692.6
Cone11ag0114 . 20 342 MAP Kinase Kinase Kinase Kinase AT1G23700 59.5 8.9e-102 368.2
Cone18ag1363 . 4 326 MAP Kinase Kinase Kinase Kinase AT1G23700 58.6 4.1e-99 359.4
Cone11ag0941 . 5 324 MAP Kinase Kinase Kinase Kinase AT1G23700 52.6 2.4e-86 317.0
Cone17ag0279 . 5 324 MAP Kinase Kinase Kinase Kinase AT1G23700 52.6 6.9e-86 315.5
Cone18ag0623 . 5 324 MAP Kinase Kinase Kinase Kinase AT1G23700 52.0 1.2e-85 314.7
Cone20ag1129 . 5 324 MAP Kinase Kinase Kinase Kinase AT1G23700 52.0 3.4e-85 313.2
Cone12ag0550 . 17 306 MAP Kinase Kinase Kinase Kinase AT1G23700 50.2 3.2e-75 280.0
Cone4ag0304 . 15 493 MAP Kinase Kinase Kinase Kinase AT4G14480 56.6 1.0e-137 487.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002203 1 4 3 2 3 1 2 1 1 2 1 1 3 2 2 3 2 5 2 1 2 2 2 2 1 1 2 4 2 2 62
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82319 PF00916 Sulfate_transp 3.10E-87 CL0062 Cone PK