Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone18ag0626 ATGGCGAAAATCTTACAGATAAGCCGGAAGCAGAGTGGGAGTAGTAATACTGAAATGATCAACAGCAAGATTGATGATAGGAACGATCAAGAGATGAAGGTCGTCGGAATTAAGAGAACACGCAAGGGCCTACCGCGCGACGCCCCTGCCAAGCGCAGCTCTGTCTTCCGCGGCGTCACAAGGCATCGATGGACGGGAAGGTATGAGGCTCATTTGTGGGATAAGAATTCCTGGAACGAGTCATTGAGCAAGAAAGGAAGACAAGTGTATTTAGGAGCATATGATGATGAAGAAGCGGCGGGACATGCTTATGACTTGGCTGCATTGAAGTACTGGGGGCATCAAACTCTCCTTAATTTCCCTTTATCCACGTATGAAGAGGATCTTAAAGAAATGGATACCCAATCAAAGGAAGAATACATTGGATCATTGAGGAGAAAAAGCAATGGATTCTCTCGAGGTGTCTCAAAATATAGAGGCGTAGCCAGACACCACAGTAATGGTAGATGGGAAGCGCGCATCGGCAGAGTAATTGGCAGCAAATATCTCTACCTTGGCACATACGAAGAAGAAGCAGCGACGGCATATGACATGGCAGCCATAGAGTACCGTGGACCTAACGCCGTTACAAACTTTGACCTGGGTCGTTACGTCAAGATCGTAAATCCTAACGACTCGAATGGCGATTCTAGTAACGCTCAGAATCTTCAACCAATTTCCGTCAATGGCGACGACGTCAACTCATTGGAAATGGCAAACGGTAATTTAGAGCAATACCCAGGAGGTACTGCACTGGGGATTTTACTGCAATCATCAAAGTTGGAGGATATATACTTGGACAGTTCATCGCCTGCCGTTGGTCATGATCATGATCATGAATACTGTCCAGTACAGCAAGTAGGGGCCCCACAGTCGGACCTACCTGTTAGAGGGAGTTTTCCCGACGGTATACAAACATTGTTTGATTGCGAGGACTATTCTAGATCATCTGGCGCCAGCTCCTACATCGACGGTACTGATGACAGTATTTTCGGCGACTTAGATTCATTTTGCATCACCAATTTTTCATTGTGA 1074 46.28 MAKILQISRKQSGSSNTEMINSKIDDRNDQEMKVVGIKRTRKGLPRDAPAKRSSVFRGVTRHRWTGRYEAHLWDKNSWNESLSKKGRQVYLGAYDDEEAAGHAYDLAALKYWGHQTLLNFPLSTYEEDLKEMDTQSKEEYIGSLRRKSNGFSRGVSKYRGVARHHSNGRWEARIGRVIGSKYLYLGTYEEEAATAYDMAAIEYRGPNAVTNFDLGRYVKIVNPNDSNGDSSNAQNLQPISVNGDDVNSLEMANGNLEQYPGGTALGILLQSSKLEDIYLDSSSPAVGHDHDHEYCPVQQVGAPQSDLPVRGSFPDGIQTLFDCEDYSRSSGASSYIDGTDDSIFGDLDSFCITNFSL 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 3211989 3215842 - Conep18aG0064200.1 Cone18ag0626 457587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone18ag0626 357 MobiDBLite consensus disorder prediction 7 21 - -
Cone18ag0626 357 CDD AP2 156 213 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone18ag0626 357 SMART rav1_2 157 219 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone18ag0626 357 SMART rav1_2 55 127 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone18ag0626 357 FunFam AP2-like ethylene-responsive transcription factor 54 123 - -
Cone18ag0626 357 ProSiteProfiles AP2/ERF domain profile. 55 121 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone18ag0626 357 ProSiteProfiles AP2/ERF domain profile. 157 213 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone18ag0626 357 PRINTS Ethylene responsive element binding protein signature 195 215 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone18ag0626 357 PRINTS Ethylene responsive element binding protein signature 56 67 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone18ag0626 357 SUPERFAMILY DNA-binding domain 156 214 IPR016177 GO:0003677(InterPro)
Cone18ag0626 357 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 40 228 - -
Cone18ag0626 357 SUPERFAMILY DNA-binding domain 54 123 IPR016177 GO:0003677(InterPro)
Cone18ag0626 357 CDD AP2 54 123 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone18ag0626 357 Gene3D AP2/ERF domain 156 214 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone18ag0626 357 Gene3D AP2/ERF domain 55 123 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone18ag0626 357 MobiDBLite consensus disorder prediction 1 25 - -
Cone18ag0626 357 Pfam AP2 domain 54 114 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone18ag0626 357 Pfam AP2 domain 156 205 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0577 Cone-Chr13:6005729 Cone18ag0626 Cone-Chr18:3211989 1.16E-57 dispersed
Cone17ag0285 Cone-Chr17:1367243 Cone18ag0626 Cone-Chr18:3211989 6.98E-108 dispersed
Cone18ag0626 Cone-Chr18:3211989 Cone20ag1123 Cone-Chr20:7687688 1.36E-109 dispersed
Cone11ag0939 Cone-Chr11:7668317 Cone18ag0626 Cone-Chr18:3211989 7.41E-221 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45175 PF12146 Hydrolase_4 4.90E-63 CL0028 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone18ag0626 K09285 - vvi:100260401 384.03