Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone18ag0626 | ATGGCGAAAATCTTACAGATAAGCCGGAAGCAGAGTGGGAGTAGTAATACTGAAATGATCAACAGCAAGATTGATGATAGGAACGATCAAGAGATGAAGGTCGTCGGAATTAAGAGAACACGCAAGGGCCTACCGCGCGACGCCCCTGCCAAGCGCAGCTCTGTCTTCCGCGGCGTCACAAGGCATCGATGGACGGGAAGGTATGAGGCTCATTTGTGGGATAAGAATTCCTGGAACGAGTCATTGAGCAAGAAAGGAAGACAAGTGTATTTAGGAGCATATGATGATGAAGAAGCGGCGGGACATGCTTATGACTTGGCTGCATTGAAGTACTGGGGGCATCAAACTCTCCTTAATTTCCCTTTATCCACGTATGAAGAGGATCTTAAAGAAATGGATACCCAATCAAAGGAAGAATACATTGGATCATTGAGGAGAAAAAGCAATGGATTCTCTCGAGGTGTCTCAAAATATAGAGGCGTAGCCAGACACCACAGTAATGGTAGATGGGAAGCGCGCATCGGCAGAGTAATTGGCAGCAAATATCTCTACCTTGGCACATACGAAGAAGAAGCAGCGACGGCATATGACATGGCAGCCATAGAGTACCGTGGACCTAACGCCGTTACAAACTTTGACCTGGGTCGTTACGTCAAGATCGTAAATCCTAACGACTCGAATGGCGATTCTAGTAACGCTCAGAATCTTCAACCAATTTCCGTCAATGGCGACGACGTCAACTCATTGGAAATGGCAAACGGTAATTTAGAGCAATACCCAGGAGGTACTGCACTGGGGATTTTACTGCAATCATCAAAGTTGGAGGATATATACTTGGACAGTTCATCGCCTGCCGTTGGTCATGATCATGATCATGAATACTGTCCAGTACAGCAAGTAGGGGCCCCACAGTCGGACCTACCTGTTAGAGGGAGTTTTCCCGACGGTATACAAACATTGTTTGATTGCGAGGACTATTCTAGATCATCTGGCGCCAGCTCCTACATCGACGGTACTGATGACAGTATTTTCGGCGACTTAGATTCATTTTGCATCACCAATTTTTCATTGTGA | 1074 | 46.28 | MAKILQISRKQSGSSNTEMINSKIDDRNDQEMKVVGIKRTRKGLPRDAPAKRSSVFRGVTRHRWTGRYEAHLWDKNSWNESLSKKGRQVYLGAYDDEEAAGHAYDLAALKYWGHQTLLNFPLSTYEEDLKEMDTQSKEEYIGSLRRKSNGFSRGVSKYRGVARHHSNGRWEARIGRVIGSKYLYLGTYEEEAATAYDMAAIEYRGPNAVTNFDLGRYVKIVNPNDSNGDSSNAQNLQPISVNGDDVNSLEMANGNLEQYPGGTALGILLQSSKLEDIYLDSSSPAVGHDHDHEYCPVQQVGAPQSDLPVRGSFPDGIQTLFDCEDYSRSSGASSYIDGTDDSIFGDLDSFCITNFSL | 357 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
18 | 3211989 | 3215842 | - | Conep18aG0064200.1 | Cone18ag0626 | 457587 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone18ag0626 | 357 | MobiDBLite | consensus disorder prediction | 7 | 21 | - | - | |
Cone18ag0626 | 357 | CDD | AP2 | 156 | 213 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone18ag0626 | 357 | SMART | rav1_2 | 157 | 219 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone18ag0626 | 357 | SMART | rav1_2 | 55 | 127 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone18ag0626 | 357 | FunFam | AP2-like ethylene-responsive transcription factor | 54 | 123 | - | - | |
Cone18ag0626 | 357 | ProSiteProfiles | AP2/ERF domain profile. | 55 | 121 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone18ag0626 | 357 | ProSiteProfiles | AP2/ERF domain profile. | 157 | 213 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone18ag0626 | 357 | PRINTS | Ethylene responsive element binding protein signature | 195 | 215 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone18ag0626 | 357 | PRINTS | Ethylene responsive element binding protein signature | 56 | 67 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone18ag0626 | 357 | SUPERFAMILY | DNA-binding domain | 156 | 214 | IPR016177 | GO:0003677(InterPro) | |
Cone18ag0626 | 357 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 40 | 228 | - | - | |
Cone18ag0626 | 357 | SUPERFAMILY | DNA-binding domain | 54 | 123 | IPR016177 | GO:0003677(InterPro) | |
Cone18ag0626 | 357 | CDD | AP2 | 54 | 123 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone18ag0626 | 357 | Gene3D | AP2/ERF domain | 156 | 214 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone18ag0626 | 357 | Gene3D | AP2/ERF domain | 55 | 123 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone18ag0626 | 357 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
Cone18ag0626 | 357 | Pfam | AP2 domain | 54 | 114 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone18ag0626 | 357 | Pfam | AP2 domain | 156 | 205 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone13ag0577 | Cone-Chr13:6005729 | Cone18ag0626 | Cone-Chr18:3211989 | 1.16E-57 | dispersed | |
Cone17ag0285 | Cone-Chr17:1367243 | Cone18ag0626 | Cone-Chr18:3211989 | 6.98E-108 | dispersed | |
Cone18ag0626 | Cone-Chr18:3211989 | Cone20ag1123 | Cone-Chr20:7687688 | 1.36E-109 | dispersed | |
Cone11ag0939 | Cone-Chr11:7668317 | Cone18ag0626 | Cone-Chr18:3211989 | 7.41E-221 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
45175 | PF12146 | Hydrolase_4 | 4.90E-63 | CL0028 | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone18ag0626 | K09285 | - | vvi:100260401 | 384.03 |