Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone18ag0696 | ATGTACGGACGAAGCTTGGTGAGGAACGGATCGCAAATGGTCCAGCAGCCGGAATGGAGTCCTTCCGGCGGAGAAACCGGACTTGAAGAATCGATGTGGCAATTAGGGCTGACAAGTAGCGAATCGTATCCAGAGCGTCCTGGAGTTCCTAACTGTGTGTATTATATGAGAACTGGATTCTGCGGATATGGTATTAGGTGTCGTTACAATCACCCTCGTGATCGAGCTGCGGTCGCAGCAGCTGTCAGAGCTACAGGAGACTATCCAGAGCGAGTGGGGGAGCCTACATGCCAGTATTATTTGAAAACCGGGACCTGTAAATTTGGTGCATCCTGTAAGTTTCACCATCCAAAACATGCAGGTGGATCCTTGAGTCAGGCTCCACTTAATATCTATGGATATCCACTACGACCGGGTGAGAAAGAATGCTCCTACTATTTGAAAACGGGGCAATGCAAGTTTGGCCTAACTTGTAAATTTCATCATCCTCAACCAGCTGGGACATCAGAACCATCTTCTGCACCTCAATTTTATCCACAGGTGCAGTCTCCTTCAGTTCCTATGCCTAAACAATATGGAGGGGCATCCACAAGTTTGGGGGTAGCCAGGCCATTGTTACCAGGTTCATATGTGCAAGGAGCCTATGGTCCTCTGTTGCTGCCCCCTGGAGTTGTTCCTATTCAGGGGTGGAGTCCTTACTCGACACCTGTAAGCCCTGTATTATCTCCTGGTGCTCAACCCACGGTTGGATCGGCTTCTCTATATGGTGTAACCCCAATTTCTTCTTCAACGCCTTCTCTTGGAAGACCGTATCTCTCATTACCTTCTTCTGTTGGCCCTTCAAGCAGTAACCGAAAGGAACTGGCATTTCCAGAGAGACCAGGTGAACCTGAATGCATGTACTATCTGAAAACAGGTGACTGTAAATTTGGGTCAGCCTGTCGATTCCATCATCCTCGAGATCGGGTGGCACCAGCCACAAATTATGTACTTAGCCCGCTTGGTCTCCCTTTGCGTCCGGGGGTGCATCCTTGTACATTTTACTTGCAAAACGGACACTGCAAGTTTGGATCGACATGTAAATTCGACCATCCAATGGGAACAATAAGATACAACCCATCAGCTTCATCTCTTATTGACATGCCAGTTGCTCCTTACCCAGTTGGCTCTCTTCTAGCTACTCTGGCTCCTTCATCTTCTACCTCAGAGCTTCGGCCCGAACTAATTTCCGGATCACGAAATGAATCCTATCCATCCAGATTGCCTTCTTCTTCCACTAATTCAGTTGGCTTAATTTACTCTCAGACTGGATCTGAAGTGCAAATTTCAAGTCAGAGCTCTGCCCCCTCAAACAGTACCAAAAGCACAAGATAG | 1374 | 47.82 | MYGRSLVRNGSQMVQQPEWSPSGGETGLEESMWQLGLTSSESYPERPGVPNCVYYMRTGFCGYGIRCRYNHPRDRAAVAAAVRATGDYPERVGEPTCQYYLKTGTCKFGASCKFHHPKHAGGSLSQAPLNIYGYPLRPGEKECSYYLKTGQCKFGLTCKFHHPQPAGTSEPSSAPQFYPQVQSPSVPMPKQYGGASTSLGVARPLLPGSYVQGAYGPLLLPPGVVPIQGWSPYSTPVSPVLSPGAQPTVGSASLYGVTPISSSTPSLGRPYLSLPSSVGPSSSNRKELAFPERPGEPECMYYLKTGDCKFGSACRFHHPRDRVAPATNYVLSPLGLPLRPGVHPCTFYLQNGHCKFGSTCKFDHPMGTIRYNPSASSLIDMPVAPYPVGSLLATLAPSSSTSELRPELISGSRNESYPSRLPSSSTNSVGLIYSQTGSEVQISSQSSAPSNSTKSTR | 457 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
18 | 3717195 | 3721504 | - | Conep18aG0071600.1 | Cone18ag0696 | 457657 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone18ag0696 | 457 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
Cone18ag0696 | 457 | PANTHER | PROTEIN PHOSPHATASE RELATED | 30 | 367 | IPR050974 | GO:0003729(PANTHER) | |
Cone18ag0696 | 457 | SUPERFAMILY | CCCH zinc finger | 50 | 75 | IPR036855 | GO:0046872(InterPro) | |
Cone18ag0696 | 457 | ProSiteProfiles | Zinc finger C3H1-type profile. | 293 | 321 | IPR000571 | GO:0046872(InterPro) | |
Cone18ag0696 | 457 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 294 | 320 | IPR000571 | GO:0046872(InterPro) | |
Cone18ag0696 | 457 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 344 | 366 | IPR000571 | GO:0046872(InterPro) | |
Cone18ag0696 | 457 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 48 | 73 | IPR000571 | GO:0046872(InterPro) | |
Cone18ag0696 | 457 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 139 | 164 | IPR000571 | GO:0046872(InterPro) | |
Cone18ag0696 | 457 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 94 | 118 | IPR000571 | GO:0046872(InterPro) | |
Cone18ag0696 | 457 | SMART | c3hfinal6 | 339 | 366 | IPR000571 | GO:0046872(InterPro) | |
Cone18ag0696 | 457 | SMART | c3hfinal6 | 293 | 320 | IPR000571 | GO:0046872(InterPro) | |
Cone18ag0696 | 457 | SMART | c3hfinal6 | 137 | 164 | IPR000571 | GO:0046872(InterPro) | |
Cone18ag0696 | 457 | SMART | c3hfinal6 | 91 | 118 | IPR000571 | GO:0046872(InterPro) | |
Cone18ag0696 | 457 | SMART | c3hfinal6 | 46 | 73 | IPR000571 | GO:0046872(InterPro) | |
Cone18ag0696 | 457 | SUPERFAMILY | CCCH zinc finger | 94 | 119 | IPR036855 | GO:0046872(InterPro) | |
Cone18ag0696 | 457 | SUPERFAMILY | CCCH zinc finger | 297 | 322 | IPR036855 | GO:0046872(InterPro) | |
Cone18ag0696 | 457 | ProSiteProfiles | Zinc finger C3H1-type profile. | 137 | 165 | IPR000571 | GO:0046872(InterPro) | |
Cone18ag0696 | 457 | SUPERFAMILY | CCCH zinc finger | 139 | 165 | IPR036855 | GO:0046872(InterPro) | |
Cone18ag0696 | 457 | Gene3D | - | 123 | 173 | - | - | |
Cone18ag0696 | 457 | MobiDBLite | consensus disorder prediction | 402 | 430 | - | - | |
Cone18ag0696 | 457 | SUPERFAMILY | CCCH zinc finger | 342 | 370 | IPR036855 | GO:0046872(InterPro) | |
Cone18ag0696 | 457 | MobiDBLite | consensus disorder prediction | 8 | 22 | - | - | |
Cone18ag0696 | 457 | ProSiteProfiles | Zinc finger C3H1-type profile. | 339 | 367 | IPR000571 | GO:0046872(InterPro) | |
Cone18ag0696 | 457 | ProSiteProfiles | Zinc finger C3H1-type profile. | 91 | 119 | IPR000571 | GO:0046872(InterPro) | |
Cone18ag0696 | 457 | Gene3D | - | 45 | 122 | - | - | |
Cone18ag0696 | 457 | Gene3D | - | 291 | 376 | - | - | |
Cone18ag0696 | 457 | MobiDBLite | consensus disorder prediction | 438 | 457 | - | - | |
Cone18ag0696 | 457 | ProSiteProfiles | Zinc finger C3H1-type profile. | 46 | 74 | IPR000571 | GO:0046872(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone10ag0605 | Cone-Chr10:2840936 | Cone18ag0696 | Cone-Chr18:3717195 | 2.71E-42 | dispersed | |
Cone12ag1541 | Cone-Chr12:10967372 | Cone18ag0696 | Cone-Chr18:3717195 | 1.02E-17 | dispersed | |
Cone18ag0696 | Cone-Chr18:3717195 | Cone1ag1687 | Cone-Chr1:57933628 | 1.72E-43 | dispersed | |
Cone11ag0862 | Cone-Chr11:7153370 | Cone18ag0696 | Cone-Chr18:3717195 | 1.63E-226 | wgd | |
Cone14ag0775 | Cone-Chr14:4485559 | Cone18ag0696 | Cone-Chr18:3717195 | 2.66E-92 | wgd | |
Cone15ag0782 | Cone-Chr15:4743249 | Cone18ag0696 | Cone-Chr18:3717195 | 6.40E-106 | wgd | |
Cone17ag0492 | Cone-Chr17:2390133 | Cone18ag0696 | Cone-Chr18:3717195 | 7.70E-77 | wgd | |
Cone18ag0696 | Cone-Chr18:3717195 | Cone20ag0922 | Cone-Chr20:6637882 | 1.31E-88 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
45179 | PF04535 | DUF588 | 4.30E-26 | CL0396 | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone18ag0696 | - | - | - | 0.0 |