Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone18ag0696 ATGTACGGACGAAGCTTGGTGAGGAACGGATCGCAAATGGTCCAGCAGCCGGAATGGAGTCCTTCCGGCGGAGAAACCGGACTTGAAGAATCGATGTGGCAATTAGGGCTGACAAGTAGCGAATCGTATCCAGAGCGTCCTGGAGTTCCTAACTGTGTGTATTATATGAGAACTGGATTCTGCGGATATGGTATTAGGTGTCGTTACAATCACCCTCGTGATCGAGCTGCGGTCGCAGCAGCTGTCAGAGCTACAGGAGACTATCCAGAGCGAGTGGGGGAGCCTACATGCCAGTATTATTTGAAAACCGGGACCTGTAAATTTGGTGCATCCTGTAAGTTTCACCATCCAAAACATGCAGGTGGATCCTTGAGTCAGGCTCCACTTAATATCTATGGATATCCACTACGACCGGGTGAGAAAGAATGCTCCTACTATTTGAAAACGGGGCAATGCAAGTTTGGCCTAACTTGTAAATTTCATCATCCTCAACCAGCTGGGACATCAGAACCATCTTCTGCACCTCAATTTTATCCACAGGTGCAGTCTCCTTCAGTTCCTATGCCTAAACAATATGGAGGGGCATCCACAAGTTTGGGGGTAGCCAGGCCATTGTTACCAGGTTCATATGTGCAAGGAGCCTATGGTCCTCTGTTGCTGCCCCCTGGAGTTGTTCCTATTCAGGGGTGGAGTCCTTACTCGACACCTGTAAGCCCTGTATTATCTCCTGGTGCTCAACCCACGGTTGGATCGGCTTCTCTATATGGTGTAACCCCAATTTCTTCTTCAACGCCTTCTCTTGGAAGACCGTATCTCTCATTACCTTCTTCTGTTGGCCCTTCAAGCAGTAACCGAAAGGAACTGGCATTTCCAGAGAGACCAGGTGAACCTGAATGCATGTACTATCTGAAAACAGGTGACTGTAAATTTGGGTCAGCCTGTCGATTCCATCATCCTCGAGATCGGGTGGCACCAGCCACAAATTATGTACTTAGCCCGCTTGGTCTCCCTTTGCGTCCGGGGGTGCATCCTTGTACATTTTACTTGCAAAACGGACACTGCAAGTTTGGATCGACATGTAAATTCGACCATCCAATGGGAACAATAAGATACAACCCATCAGCTTCATCTCTTATTGACATGCCAGTTGCTCCTTACCCAGTTGGCTCTCTTCTAGCTACTCTGGCTCCTTCATCTTCTACCTCAGAGCTTCGGCCCGAACTAATTTCCGGATCACGAAATGAATCCTATCCATCCAGATTGCCTTCTTCTTCCACTAATTCAGTTGGCTTAATTTACTCTCAGACTGGATCTGAAGTGCAAATTTCAAGTCAGAGCTCTGCCCCCTCAAACAGTACCAAAAGCACAAGATAG 1374 47.82 MYGRSLVRNGSQMVQQPEWSPSGGETGLEESMWQLGLTSSESYPERPGVPNCVYYMRTGFCGYGIRCRYNHPRDRAAVAAAVRATGDYPERVGEPTCQYYLKTGTCKFGASCKFHHPKHAGGSLSQAPLNIYGYPLRPGEKECSYYLKTGQCKFGLTCKFHHPQPAGTSEPSSAPQFYPQVQSPSVPMPKQYGGASTSLGVARPLLPGSYVQGAYGPLLLPPGVVPIQGWSPYSTPVSPVLSPGAQPTVGSASLYGVTPISSSTPSLGRPYLSLPSSVGPSSSNRKELAFPERPGEPECMYYLKTGDCKFGSACRFHHPRDRVAPATNYVLSPLGLPLRPGVHPCTFYLQNGHCKFGSTCKFDHPMGTIRYNPSASSLIDMPVAPYPVGSLLATLAPSSSTSELRPELISGSRNESYPSRLPSSSTNSVGLIYSQTGSEVQISSQSSAPSNSTKSTR 457
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 3717195 3721504 - Conep18aG0071600.1 Cone18ag0696 457657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone18ag0696 457 MobiDBLite consensus disorder prediction 1 26 - -
Cone18ag0696 457 PANTHER PROTEIN PHOSPHATASE RELATED 30 367 IPR050974 GO:0003729(PANTHER)
Cone18ag0696 457 SUPERFAMILY CCCH zinc finger 50 75 IPR036855 GO:0046872(InterPro)
Cone18ag0696 457 ProSiteProfiles Zinc finger C3H1-type profile. 293 321 IPR000571 GO:0046872(InterPro)
Cone18ag0696 457 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 294 320 IPR000571 GO:0046872(InterPro)
Cone18ag0696 457 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 344 366 IPR000571 GO:0046872(InterPro)
Cone18ag0696 457 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 48 73 IPR000571 GO:0046872(InterPro)
Cone18ag0696 457 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 139 164 IPR000571 GO:0046872(InterPro)
Cone18ag0696 457 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 94 118 IPR000571 GO:0046872(InterPro)
Cone18ag0696 457 SMART c3hfinal6 339 366 IPR000571 GO:0046872(InterPro)
Cone18ag0696 457 SMART c3hfinal6 293 320 IPR000571 GO:0046872(InterPro)
Cone18ag0696 457 SMART c3hfinal6 137 164 IPR000571 GO:0046872(InterPro)
Cone18ag0696 457 SMART c3hfinal6 91 118 IPR000571 GO:0046872(InterPro)
Cone18ag0696 457 SMART c3hfinal6 46 73 IPR000571 GO:0046872(InterPro)
Cone18ag0696 457 SUPERFAMILY CCCH zinc finger 94 119 IPR036855 GO:0046872(InterPro)
Cone18ag0696 457 SUPERFAMILY CCCH zinc finger 297 322 IPR036855 GO:0046872(InterPro)
Cone18ag0696 457 ProSiteProfiles Zinc finger C3H1-type profile. 137 165 IPR000571 GO:0046872(InterPro)
Cone18ag0696 457 SUPERFAMILY CCCH zinc finger 139 165 IPR036855 GO:0046872(InterPro)
Cone18ag0696 457 Gene3D - 123 173 - -
Cone18ag0696 457 MobiDBLite consensus disorder prediction 402 430 - -
Cone18ag0696 457 SUPERFAMILY CCCH zinc finger 342 370 IPR036855 GO:0046872(InterPro)
Cone18ag0696 457 MobiDBLite consensus disorder prediction 8 22 - -
Cone18ag0696 457 ProSiteProfiles Zinc finger C3H1-type profile. 339 367 IPR000571 GO:0046872(InterPro)
Cone18ag0696 457 ProSiteProfiles Zinc finger C3H1-type profile. 91 119 IPR000571 GO:0046872(InterPro)
Cone18ag0696 457 Gene3D - 45 122 - -
Cone18ag0696 457 Gene3D - 291 376 - -
Cone18ag0696 457 MobiDBLite consensus disorder prediction 438 457 - -
Cone18ag0696 457 ProSiteProfiles Zinc finger C3H1-type profile. 46 74 IPR000571 GO:0046872(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0605 Cone-Chr10:2840936 Cone18ag0696 Cone-Chr18:3717195 2.71E-42 dispersed
Cone12ag1541 Cone-Chr12:10967372 Cone18ag0696 Cone-Chr18:3717195 1.02E-17 dispersed
Cone18ag0696 Cone-Chr18:3717195 Cone1ag1687 Cone-Chr1:57933628 1.72E-43 dispersed
Cone11ag0862 Cone-Chr11:7153370 Cone18ag0696 Cone-Chr18:3717195 1.63E-226 wgd
Cone14ag0775 Cone-Chr14:4485559 Cone18ag0696 Cone-Chr18:3717195 2.66E-92 wgd
Cone15ag0782 Cone-Chr15:4743249 Cone18ag0696 Cone-Chr18:3717195 6.40E-106 wgd
Cone17ag0492 Cone-Chr17:2390133 Cone18ag0696 Cone-Chr18:3717195 7.70E-77 wgd
Cone18ag0696 Cone-Chr18:3717195 Cone20ag0922 Cone-Chr20:6637882 1.31E-88 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45179 PF04535 DUF588 4.30E-26 CL0396 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone18ag0696 - - - 0.0