Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone18ag0772 | ATGGAGACTAGATTTGGGGGTGAAGCTCAATTTTTATGTGGTATGGGTCCTATGGACTTGAGACCTATGGAGAAGAGGACTCTAGAATGGGATTTGAATGATTGGAAATGGGATGGTGATCTTTTCATAGCCACCCAATTGAACGAGGTCCCATCTGATGAATTGACCCAAAAGGGGTTTTTTCCGGTCTGTGGGCCCCAGGTCCCACCAAGTGGAGGCTCATCGTCAAATTGCTCCTCGTCTTGCTCGGTCGATGTCAATTTGGGGATCGAGAAAGGGAAGAGGGAAGTGGAGAAGAGAAGGAGGGTTACTACTAGTTTGAACAATGGAGAGGAACAAGGTAGTAATCTTAGTCTAAAGCTTGGAGGTGGAGGAGGAGGAGGAGATCGTTATGGGGTTAATGAGAGGGAATTGGGAAGTGGGTGGGAAGAAGAAACAAGTGGGAAAAAGACAAAGTTGGTTGGAGGAGTTTCAAGCCGATCTGGGGCTTGTCAGGTGCAAGATTGCGGGGCTGATCTAAGCACTGCTAAGGATTATCATAGACGGCACAAGGTTTGTGAGATACATTCTAAGGCAAGTAAAGCACTTGTTGGGAATGTATTGCAACGGTTTTGTCAACAATGCAGTAGGTTCCATGCTCTTCAAGAGTTTGATGAAGGGAGAAGAAGCTGCCGTAGGCGTTTGGCTGGCCATAATCAAAGGCGAAGAAAAACAAATCCTGACCCAGTTGTGGATAAAAGTCCCTCTCCTGATGATCAGAATAGTGGCTATCTGCTCATGAGTCTACTCAAGATACTTTCCAACATGCACTCCAATGGATCAAACCAAACCACAGATCAGGATATGCTGTCTCATCTCGTAAGGAGCCTTGCCTGTCAAACTAGTGATCAAGGGGGAAGAAACATATCCGGGTTTCTGCAAGAATCTCCAAATTTTCTAACCAATAGAAACTCCATTGGAGTTTCTGAACTAGCTTCTAAGTTTCTCTCAAATGGTCCTCAGGTATGCCCGTCAAGATTAACAGGGGACTATCCTCCAGGACCTTCATCTGAGACTCCTGAACAAGGAGGAATTATGGGTTCTGATAAAAGTAAGGGTAGAGATGTAGAAATCACATCTTTAAAACCTAGCATTTCGAACAGCCCTCCATCTTATACCGAAAACAGGGAAACTGCTGCGGGCCAAAGCAAGGTGATCAATTTTGATTTGAATGATATATACGTTGATTCAGATGATGGTATGGAAGATATGGGGAGATTGTCTCCCCCTGAGAATTTGGGGACGAGCTCACTTGAGTGTCCTTCTTGGGTTCAACAAGACTCTCATCAATCAAGTCCACCTCAAACTAGTGGAAATTCCGAGTCCGTATTTGCTCCTTCTCCCTCTAGCTCTAATGGAGAAGCTCAGAGCCGAACAGGCCGTATTGTCTTCAAACTGTTTGGAAAAGAACCAAATGATTTTCCTCTTGTTCTCCGATCTCAGATATTTGATTGGCTATCAAACAGTCCTTCTGACATTGAGAGCTACATCCGACCTGGTTGCGTCATTCTGACGATATATCTCCGCCAGACAGAATCCGCTTGGGACAAGCTTTGCTATGACTTGAGTGCAAGTTTAAATAGGCTTCTGCAAGTTTCAGATGATGCTTTCTGGAAAACTGGATGGATTTATATTAGGCTTGAGCATCAAATAGCTTTTGTTAACCATGGCCAGGTTGTAATAGACACATCCTTGCCTCTTAGAGGCGATAGTTATGGTAGAATAGTAAGTGTGAAACCTATTGCAGTATCTGCCTCTGAGTCGGCTCGGTTTTCAGTTAGAGGCTCAAACTTGATCCGTCCAGCAACAAGGTTACTTTGTGCATTAGAAGGGAAGTATCTAGCTCAGACTTCTATTCAAGAATCAAAAGAAAGTCTGGAGAGCTCAAGGGAGCAAAATGACATCCAGTGCGTTAGCTTTTCTTGCTCCATTCCGATAATCAATGGACGGGGCTTCATTGAGGTAGAAGATCAGGGTCTTAGCAGCAGCTTCATTCCATTTATAGTTGCTGAGGAGGATGTTTGTTCAGAGATCCGTTTGCTCGAGACTGCTTTCGAGCCAACTGAGATAGATTCGGTAAATTCCGAGAGCTCTAGAAAACCAGAAGTGAGGAATCAAGCAATGAATTTCATTCATGAAATGGGTTGGCTTCTTCATAGGACTCAACTGAAGTCCCGGCCTGGTGACTTGGGCCCAAACCCAGACCTCTTCCCTCTGGAACGGTTCAAGTGGCTAGTTGCCTTTTCCATGGACCGTGATTGGCATGCCGTAGTGAAGAAGCTGTTGGATGTTTTGCTCGATGGTAGGGCCGTTGGTTTTGGAGATTACCCTTCATTAAGATTTGCATTATCCGAAATGGGTCTTCTTCACCGTGCTGTGAGGAGAAGTAGTAGGCCATTGGTTGGACTCCTTATAGGATATAACTCTAAAGCCTTCTTTGATACACTAGAATCTGAAGAAGAAAGTGATCCTGGATTCTTGTTCAGACCTGATGCTAAAGGCCCTGCTGGTTTGACCCCACTTCACATCGCTGCTGGTAAAGATGGTTCTGAGGAGATAATAGATGCACTAACTGATGATCCTGCAAAGGTGGGACTTGAGGCATGGAAGAGTGCACGTGACAGCACGGGGTCCACCCCGGAAGATTACGCCCGCCTACGTGGCCACTACTCGTACATCCACTTGGTCCAGAAGAAGATCAACCAGAGAACAACATCGTCTGGCCAAGTGATCCTAGACATTCCCAGAATCCTCTCAGAAAATAGTACAAATCTAAAGTCGGATGTAAACGATCAGTTGACCACCGAATTCAAGGCTGGAAGTTTCGAACTTAATTGTCCTGTTAGGCAGAACTGTGGGCTTTGTGCTCGGAAAGTGGGGGCCCACCAAGGAGTGGGCCGGTCTCTGGTGTATAGGCCCGCAATGCTTTCAATGGTGGCTGTGGCTGCGGTTTGTGTTTGCGTTGCCCTTCTGTTTAAAAGCTCCCCGGAAGTTCTCTATGTTTTCCAGCCATTCAGGTGGGAATCTCTGGAGTTCGGAACAAGCTGA | 3087 | 45.74 | METRFGGEAQFLCGMGPMDLRPMEKRTLEWDLNDWKWDGDLFIATQLNEVPSDELTQKGFFPVCGPQVPPSGGSSSNCSSSCSVDVNLGIEKGKREVEKRRRVTTSLNNGEEQGSNLSLKLGGGGGGGDRYGVNERELGSGWEEETSGKKTKLVGGVSSRSGACQVQDCGADLSTAKDYHRRHKVCEIHSKASKALVGNVLQRFCQQCSRFHALQEFDEGRRSCRRRLAGHNQRRRKTNPDPVVDKSPSPDDQNSGYLLMSLLKILSNMHSNGSNQTTDQDMLSHLVRSLACQTSDQGGRNISGFLQESPNFLTNRNSIGVSELASKFLSNGPQVCPSRLTGDYPPGPSSETPEQGGIMGSDKSKGRDVEITSLKPSISNSPPSYTENRETAAGQSKVINFDLNDIYVDSDDGMEDMGRLSPPENLGTSSLECPSWVQQDSHQSSPPQTSGNSESVFAPSPSSSNGEAQSRTGRIVFKLFGKEPNDFPLVLRSQIFDWLSNSPSDIESYIRPGCVILTIYLRQTESAWDKLCYDLSASLNRLLQVSDDAFWKTGWIYIRLEHQIAFVNHGQVVIDTSLPLRGDSYGRIVSVKPIAVSASESARFSVRGSNLIRPATRLLCALEGKYLAQTSIQESKESLESSREQNDIQCVSFSCSIPIINGRGFIEVEDQGLSSSFIPFIVAEEDVCSEIRLLETAFEPTEIDSVNSESSRKPEVRNQAMNFIHEMGWLLHRTQLKSRPGDLGPNPDLFPLERFKWLVAFSMDRDWHAVVKKLLDVLLDGRAVGFGDYPSLRFALSEMGLLHRAVRRSSRPLVGLLIGYNSKAFFDTLESEEESDPGFLFRPDAKGPAGLTPLHIAAGKDGSEEIIDALTDDPAKVGLEAWKSARDSTGSTPEDYARLRGHYSYIHLVQKKINQRTTSSGQVILDIPRILSENSTNLKSDVNDQLTTEFKAGSFELNCPVRQNCGLCARKVGAHQGVGRSLVYRPAMLSMVAVAAVCVCVALLFKSSPEVLYVFQPFRWESLEFGTS | 1028 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
18 | 4379669 | 4385157 | + | Conep18aG0079700.1 | Cone18ag0772 | 457733 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone18ag0772 | 1028 | MobiDBLite | consensus disorder prediction | 95 | 126 | - | - | |
Cone18ag0772 | 1028 | MobiDBLite | consensus disorder prediction | 410 | 469 | - | - | |
Cone18ag0772 | 1028 | FunFam | Squamosa promoter-binding-like protein 14 | 156 | 225 | - | - | |
Cone18ag0772 | 1028 | Pfam | SBP domain | 164 | 237 | IPR004333 | GO:0003677(InterPro) | |
Cone18ag0772 | 1028 | Gene3D | - | 772 | 922 | IPR036770 | - | |
Cone18ag0772 | 1028 | ProSiteProfiles | Zinc finger SBP-type profile. | 161 | 238 | IPR004333 | GO:0003677(InterPro) | |
Cone18ag0772 | 1028 | MobiDBLite | consensus disorder prediction | 373 | 393 | - | - | |
Cone18ag0772 | 1028 | Gene3D | - | 155 | 225 | IPR036893 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Cone18ag0772 | 1028 | MobiDBLite | consensus disorder prediction | 332 | 393 | - | - | |
Cone18ag0772 | 1028 | MobiDBLite | consensus disorder prediction | 423 | 469 | - | - | |
Cone18ag0772 | 1028 | SUPERFAMILY | Ankyrin repeat | 796 | 908 | IPR036770 | - | |
Cone18ag0772 | 1028 | PANTHER | SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 | 33 | 1023 | IPR044817 | GO:0003677(InterPro) | |
Cone18ag0772 | 1028 | MobiDBLite | consensus disorder prediction | 228 | 255 | - | - | |
Cone18ag0772 | 1028 | SUPERFAMILY | SBT domain | 163 | 243 | IPR036893 | GO:0003677(InterPro)|GO:0005634(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone17ag0385 | Cone-Chr17:1823945 | Cone18ag0772 | Cone-Chr18:4379669 | 0 | dispersed | |
Cone18ag0772 | Cone-Chr18:4379669 | Cone2ag0792 | Cone-Chr2:33927478 | 1.21E-30 | dispersed | |
Cone11ag0721 | Cone-Chr11:4985716 | Cone18ag0772 | Cone-Chr18:4379669 | 0 | wgd | |
Cone18ag0772 | Cone-Chr18:4379669 | Cone20ag1033 | Cone-Chr20:7194361 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
45186 | PF15341 | SLX9 | 2.50E-10 | No_clan | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone18ag0772 | - | - | - | 0.0 |