Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone18ag0772 ATGGAGACTAGATTTGGGGGTGAAGCTCAATTTTTATGTGGTATGGGTCCTATGGACTTGAGACCTATGGAGAAGAGGACTCTAGAATGGGATTTGAATGATTGGAAATGGGATGGTGATCTTTTCATAGCCACCCAATTGAACGAGGTCCCATCTGATGAATTGACCCAAAAGGGGTTTTTTCCGGTCTGTGGGCCCCAGGTCCCACCAAGTGGAGGCTCATCGTCAAATTGCTCCTCGTCTTGCTCGGTCGATGTCAATTTGGGGATCGAGAAAGGGAAGAGGGAAGTGGAGAAGAGAAGGAGGGTTACTACTAGTTTGAACAATGGAGAGGAACAAGGTAGTAATCTTAGTCTAAAGCTTGGAGGTGGAGGAGGAGGAGGAGATCGTTATGGGGTTAATGAGAGGGAATTGGGAAGTGGGTGGGAAGAAGAAACAAGTGGGAAAAAGACAAAGTTGGTTGGAGGAGTTTCAAGCCGATCTGGGGCTTGTCAGGTGCAAGATTGCGGGGCTGATCTAAGCACTGCTAAGGATTATCATAGACGGCACAAGGTTTGTGAGATACATTCTAAGGCAAGTAAAGCACTTGTTGGGAATGTATTGCAACGGTTTTGTCAACAATGCAGTAGGTTCCATGCTCTTCAAGAGTTTGATGAAGGGAGAAGAAGCTGCCGTAGGCGTTTGGCTGGCCATAATCAAAGGCGAAGAAAAACAAATCCTGACCCAGTTGTGGATAAAAGTCCCTCTCCTGATGATCAGAATAGTGGCTATCTGCTCATGAGTCTACTCAAGATACTTTCCAACATGCACTCCAATGGATCAAACCAAACCACAGATCAGGATATGCTGTCTCATCTCGTAAGGAGCCTTGCCTGTCAAACTAGTGATCAAGGGGGAAGAAACATATCCGGGTTTCTGCAAGAATCTCCAAATTTTCTAACCAATAGAAACTCCATTGGAGTTTCTGAACTAGCTTCTAAGTTTCTCTCAAATGGTCCTCAGGTATGCCCGTCAAGATTAACAGGGGACTATCCTCCAGGACCTTCATCTGAGACTCCTGAACAAGGAGGAATTATGGGTTCTGATAAAAGTAAGGGTAGAGATGTAGAAATCACATCTTTAAAACCTAGCATTTCGAACAGCCCTCCATCTTATACCGAAAACAGGGAAACTGCTGCGGGCCAAAGCAAGGTGATCAATTTTGATTTGAATGATATATACGTTGATTCAGATGATGGTATGGAAGATATGGGGAGATTGTCTCCCCCTGAGAATTTGGGGACGAGCTCACTTGAGTGTCCTTCTTGGGTTCAACAAGACTCTCATCAATCAAGTCCACCTCAAACTAGTGGAAATTCCGAGTCCGTATTTGCTCCTTCTCCCTCTAGCTCTAATGGAGAAGCTCAGAGCCGAACAGGCCGTATTGTCTTCAAACTGTTTGGAAAAGAACCAAATGATTTTCCTCTTGTTCTCCGATCTCAGATATTTGATTGGCTATCAAACAGTCCTTCTGACATTGAGAGCTACATCCGACCTGGTTGCGTCATTCTGACGATATATCTCCGCCAGACAGAATCCGCTTGGGACAAGCTTTGCTATGACTTGAGTGCAAGTTTAAATAGGCTTCTGCAAGTTTCAGATGATGCTTTCTGGAAAACTGGATGGATTTATATTAGGCTTGAGCATCAAATAGCTTTTGTTAACCATGGCCAGGTTGTAATAGACACATCCTTGCCTCTTAGAGGCGATAGTTATGGTAGAATAGTAAGTGTGAAACCTATTGCAGTATCTGCCTCTGAGTCGGCTCGGTTTTCAGTTAGAGGCTCAAACTTGATCCGTCCAGCAACAAGGTTACTTTGTGCATTAGAAGGGAAGTATCTAGCTCAGACTTCTATTCAAGAATCAAAAGAAAGTCTGGAGAGCTCAAGGGAGCAAAATGACATCCAGTGCGTTAGCTTTTCTTGCTCCATTCCGATAATCAATGGACGGGGCTTCATTGAGGTAGAAGATCAGGGTCTTAGCAGCAGCTTCATTCCATTTATAGTTGCTGAGGAGGATGTTTGTTCAGAGATCCGTTTGCTCGAGACTGCTTTCGAGCCAACTGAGATAGATTCGGTAAATTCCGAGAGCTCTAGAAAACCAGAAGTGAGGAATCAAGCAATGAATTTCATTCATGAAATGGGTTGGCTTCTTCATAGGACTCAACTGAAGTCCCGGCCTGGTGACTTGGGCCCAAACCCAGACCTCTTCCCTCTGGAACGGTTCAAGTGGCTAGTTGCCTTTTCCATGGACCGTGATTGGCATGCCGTAGTGAAGAAGCTGTTGGATGTTTTGCTCGATGGTAGGGCCGTTGGTTTTGGAGATTACCCTTCATTAAGATTTGCATTATCCGAAATGGGTCTTCTTCACCGTGCTGTGAGGAGAAGTAGTAGGCCATTGGTTGGACTCCTTATAGGATATAACTCTAAAGCCTTCTTTGATACACTAGAATCTGAAGAAGAAAGTGATCCTGGATTCTTGTTCAGACCTGATGCTAAAGGCCCTGCTGGTTTGACCCCACTTCACATCGCTGCTGGTAAAGATGGTTCTGAGGAGATAATAGATGCACTAACTGATGATCCTGCAAAGGTGGGACTTGAGGCATGGAAGAGTGCACGTGACAGCACGGGGTCCACCCCGGAAGATTACGCCCGCCTACGTGGCCACTACTCGTACATCCACTTGGTCCAGAAGAAGATCAACCAGAGAACAACATCGTCTGGCCAAGTGATCCTAGACATTCCCAGAATCCTCTCAGAAAATAGTACAAATCTAAAGTCGGATGTAAACGATCAGTTGACCACCGAATTCAAGGCTGGAAGTTTCGAACTTAATTGTCCTGTTAGGCAGAACTGTGGGCTTTGTGCTCGGAAAGTGGGGGCCCACCAAGGAGTGGGCCGGTCTCTGGTGTATAGGCCCGCAATGCTTTCAATGGTGGCTGTGGCTGCGGTTTGTGTTTGCGTTGCCCTTCTGTTTAAAAGCTCCCCGGAAGTTCTCTATGTTTTCCAGCCATTCAGGTGGGAATCTCTGGAGTTCGGAACAAGCTGA 3087 45.74 METRFGGEAQFLCGMGPMDLRPMEKRTLEWDLNDWKWDGDLFIATQLNEVPSDELTQKGFFPVCGPQVPPSGGSSSNCSSSCSVDVNLGIEKGKREVEKRRRVTTSLNNGEEQGSNLSLKLGGGGGGGDRYGVNERELGSGWEEETSGKKTKLVGGVSSRSGACQVQDCGADLSTAKDYHRRHKVCEIHSKASKALVGNVLQRFCQQCSRFHALQEFDEGRRSCRRRLAGHNQRRRKTNPDPVVDKSPSPDDQNSGYLLMSLLKILSNMHSNGSNQTTDQDMLSHLVRSLACQTSDQGGRNISGFLQESPNFLTNRNSIGVSELASKFLSNGPQVCPSRLTGDYPPGPSSETPEQGGIMGSDKSKGRDVEITSLKPSISNSPPSYTENRETAAGQSKVINFDLNDIYVDSDDGMEDMGRLSPPENLGTSSLECPSWVQQDSHQSSPPQTSGNSESVFAPSPSSSNGEAQSRTGRIVFKLFGKEPNDFPLVLRSQIFDWLSNSPSDIESYIRPGCVILTIYLRQTESAWDKLCYDLSASLNRLLQVSDDAFWKTGWIYIRLEHQIAFVNHGQVVIDTSLPLRGDSYGRIVSVKPIAVSASESARFSVRGSNLIRPATRLLCALEGKYLAQTSIQESKESLESSREQNDIQCVSFSCSIPIINGRGFIEVEDQGLSSSFIPFIVAEEDVCSEIRLLETAFEPTEIDSVNSESSRKPEVRNQAMNFIHEMGWLLHRTQLKSRPGDLGPNPDLFPLERFKWLVAFSMDRDWHAVVKKLLDVLLDGRAVGFGDYPSLRFALSEMGLLHRAVRRSSRPLVGLLIGYNSKAFFDTLESEEESDPGFLFRPDAKGPAGLTPLHIAAGKDGSEEIIDALTDDPAKVGLEAWKSARDSTGSTPEDYARLRGHYSYIHLVQKKINQRTTSSGQVILDIPRILSENSTNLKSDVNDQLTTEFKAGSFELNCPVRQNCGLCARKVGAHQGVGRSLVYRPAMLSMVAVAAVCVCVALLFKSSPEVLYVFQPFRWESLEFGTS 1028
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 4379669 4385157 + Conep18aG0079700.1 Cone18ag0772 457733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone18ag0772 1028 MobiDBLite consensus disorder prediction 95 126 - -
Cone18ag0772 1028 MobiDBLite consensus disorder prediction 410 469 - -
Cone18ag0772 1028 FunFam Squamosa promoter-binding-like protein 14 156 225 - -
Cone18ag0772 1028 Pfam SBP domain 164 237 IPR004333 GO:0003677(InterPro)
Cone18ag0772 1028 Gene3D - 772 922 IPR036770 -
Cone18ag0772 1028 ProSiteProfiles Zinc finger SBP-type profile. 161 238 IPR004333 GO:0003677(InterPro)
Cone18ag0772 1028 MobiDBLite consensus disorder prediction 373 393 - -
Cone18ag0772 1028 Gene3D - 155 225 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Cone18ag0772 1028 MobiDBLite consensus disorder prediction 332 393 - -
Cone18ag0772 1028 MobiDBLite consensus disorder prediction 423 469 - -
Cone18ag0772 1028 SUPERFAMILY Ankyrin repeat 796 908 IPR036770 -
Cone18ag0772 1028 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 33 1023 IPR044817 GO:0003677(InterPro)
Cone18ag0772 1028 MobiDBLite consensus disorder prediction 228 255 - -
Cone18ag0772 1028 SUPERFAMILY SBT domain 163 243 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0385 Cone-Chr17:1823945 Cone18ag0772 Cone-Chr18:4379669 0 dispersed
Cone18ag0772 Cone-Chr18:4379669 Cone2ag0792 Cone-Chr2:33927478 1.21E-30 dispersed
Cone11ag0721 Cone-Chr11:4985716 Cone18ag0772 Cone-Chr18:4379669 0 wgd
Cone18ag0772 Cone-Chr18:4379669 Cone20ag1033 Cone-Chr20:7194361 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45186 PF15341 SLX9 2.50E-10 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone18ag0772 - - - 0.0