Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone18ag0772 ATGGAGACTAGATTTGGGGGTGAAGCTCAATTTTTATGTGGTATGGGTCCTATGGACTTGAGACCTATGGAGAAGAGGACTCTAGAATGGGATTTGAATGATTGGAAATGGGATGGTGATCTTTTCATAGCCACCCAATTGAACGAGGTCCCATCTGATGAATTGACCCAAAAGGGGTTTTTTCCGGTCTGTGGGCCCCAGGTCCCACCAAGTGGAGGCTCATCGTCAAATTGCTCCTCGTCTTGCTCGGTCGATGTCAATTTGGGGATCGAGAAAGGGAAGAGGGAAGTGGAGAAGAGAAGGAGGGTTACTACTAGTTTGAACAATGGAGAGGAACAAGGTAGTAATCTTAGTCTAAAGCTTGGAGGTGGAGGAGGAGGAGGAGATCGTTATGGGGTTAATGAGAGGGAATTGGGAAGTGGGTGGGAAGAAGAAACAAGTGGGAAAAAGACAAAGTTGGTTGGAGGAGTTTCAAGCCGATCTGGGGCTTGTCAGGTGCAAGATTGCGGGGCTGATCTAAGCACTGCTAAGGATTATCATAGACGGCACAAGGTTTGTGAGATACATTCTAAGGCAAGTAAAGCACTTGTTGGGAATGTATTGCAACGGTTTTGTCAACAATGCAGTAGGTTCCATGCTCTTCAAGAGTTTGATGAAGGGAGAAGAAGCTGCCGTAGGCGTTTGGCTGGCCATAATCAAAGGCGAAGAAAAACAAATCCTGACCCAGTTGTGGATAAAAGTCCCTCTCCTGATGATCAGAATAGTGGCTATCTGCTCATGAGTCTACTCAAGATACTTTCCAACATGCACTCCAATGGATCAAACCAAACCACAGATCAGGATATGCTGTCTCATCTCGTAAGGAGCCTTGCCTGTCAAACTAGTGATCAAGGGGGAAGAAACATATCCGGGTTTCTGCAAGAATCTCCAAATTTTCTAACCAATAGAAACTCCATTGGAGTTTCTGAACTAGCTTCTAAGTTTCTCTCAAATGGTCCTCAGGTATGCCCGTCAAGATTAACAGGGGACTATCCTCCAGGACCTTCATCTGAGACTCCTGAACAAGGAGGAATTATGGGTTCTGATAAAAGTAAGGGTAGAGATGTAGAAATCACATCTTTAAAACCTAGCATTTCGAACAGCCCTCCATCTTATACCGAAAACAGGGAAACTGCTGCGGGCCAAAGCAAGGTGATCAATTTTGATTTGAATGATATATACGTTGATTCAGATGATGGTATGGAAGATATGGGGAGATTGTCTCCCCCTGAGAATTTGGGGACGAGCTCACTTGAGTGTCCTTCTTGGGTTCAACAAGACTCTCATCAATCAAGTCCACCTCAAACTAGTGGAAATTCCGAGTCCGTATTTGCTCCTTCTCCCTCTAGCTCTAATGGAGAAGCTCAGAGCCGAACAGGCCGTATTGTCTTCAAACTGTTTGGAAAAGAACCAAATGATTTTCCTCTTGTTCTCCGATCTCAGATATTTGATTGGCTATCAAACAGTCCTTCTGACATTGAGAGCTACATCCGACCTGGTTGCGTCATTCTGACGATATATCTCCGCCAGACAGAATCCGCTTGGGACAAGCTTTGCTATGACTTGAGTGCAAGTTTAAATAGGCTTCTGCAAGTTTCAGATGATGCTTTCTGGAAAACTGGATGGATTTATATTAGGCTTGAGCATCAAATAGCTTTTGTTAACCATGGCCAGGTTGTAATAGACACATCCTTGCCTCTTAGAGGCGATAGTTATGGTAGAATAGTAAGTGTGAAACCTATTGCAGTATCTGCCTCTGAGTCGGCTCGGTTTTCAGTTAGAGGCTCAAACTTGATCCGTCCAGCAACAAGGTTACTTTGTGCATTAGAAGGGAAGTATCTAGCTCAGACTTCTATTCAAGAATCAAAAGAAAGTCTGGAGAGCTCAAGGGAGCAAAATGACATCCAGTGCGTTAGCTTTTCTTGCTCCATTCCGATAATCAATGGACGGGGCTTCATTGAGGTAGAAGATCAGGGTCTTAGCAGCAGCTTCATTCCATTTATAGTTGCTGAGGAGGATGTTTGTTCAGAGATCCGTTTGCTCGAGACTGCTTTCGAGCCAACTGAGATAGATTCGGTAAATTCCGAGAGCTCTAGAAAACCAGAAGTGAGGAATCAAGCAATGAATTTCATTCATGAAATGGGTTGGCTTCTTCATAGGACTCAACTGAAGTCCCGGCCTGGTGACTTGGGCCCAAACCCAGACCTCTTCCCTCTGGAACGGTTCAAGTGGCTAGTTGCCTTTTCCATGGACCGTGATTGGCATGCCGTAGTGAAGAAGCTGTTGGATGTTTTGCTCGATGGTAGGGCCGTTGGTTTTGGAGATTACCCTTCATTAAGATTTGCATTATCCGAAATGGGTCTTCTTCACCGTGCTGTGAGGAGAAGTAGTAGGCCATTGGTTGGACTCCTTATAGGATATAACTCTAAAGCCTTCTTTGATACACTAGAATCTGAAGAAGAAAGTGATCCTGGATTCTTGTTCAGACCTGATGCTAAAGGCCCTGCTGGTTTGACCCCACTTCACATCGCTGCTGGTAAAGATGGTTCTGAGGAGATAATAGATGCACTAACTGATGATCCTGCAAAGGTGGGACTTGAGGCATGGAAGAGTGCACGTGACAGCACGGGGTCCACCCCGGAAGATTACGCCCGCCTACGTGGCCACTACTCGTACATCCACTTGGTCCAGAAGAAGATCAACCAGAGAACAACATCGTCTGGCCAAGTGATCCTAGACATTCCCAGAATCCTCTCAGAAAATAGTACAAATCTAAAGTCGGATGTAAACGATCAGTTGACCACCGAATTCAAGGCTGGAAGTTTCGAACTTAATTGTCCTGTTAGGCAGAACTGTGGGCTTTGTGCTCGGAAAGTGGGGGCCCACCAAGGAGTGGGCCGGTCTCTGGTGTATAGGCCCGCAATGCTTTCAATGGTGGCTGTGGCTGCGGTTTGTGTTTGCGTTGCCCTTCTGTTTAAAAGCTCCCCGGAAGTTCTCTATGTTTTCCAGCCATTCAGGTGGGAATCTCTGGAGTTCGGAACAAGCTGA 3087 45.74 METRFGGEAQFLCGMGPMDLRPMEKRTLEWDLNDWKWDGDLFIATQLNEVPSDELTQKGFFPVCGPQVPPSGGSSSNCSSSCSVDVNLGIEKGKREVEKRRRVTTSLNNGEEQGSNLSLKLGGGGGGGDRYGVNERELGSGWEEETSGKKTKLVGGVSSRSGACQVQDCGADLSTAKDYHRRHKVCEIHSKASKALVGNVLQRFCQQCSRFHALQEFDEGRRSCRRRLAGHNQRRRKTNPDPVVDKSPSPDDQNSGYLLMSLLKILSNMHSNGSNQTTDQDMLSHLVRSLACQTSDQGGRNISGFLQESPNFLTNRNSIGVSELASKFLSNGPQVCPSRLTGDYPPGPSSETPEQGGIMGSDKSKGRDVEITSLKPSISNSPPSYTENRETAAGQSKVINFDLNDIYVDSDDGMEDMGRLSPPENLGTSSLECPSWVQQDSHQSSPPQTSGNSESVFAPSPSSSNGEAQSRTGRIVFKLFGKEPNDFPLVLRSQIFDWLSNSPSDIESYIRPGCVILTIYLRQTESAWDKLCYDLSASLNRLLQVSDDAFWKTGWIYIRLEHQIAFVNHGQVVIDTSLPLRGDSYGRIVSVKPIAVSASESARFSVRGSNLIRPATRLLCALEGKYLAQTSIQESKESLESSREQNDIQCVSFSCSIPIINGRGFIEVEDQGLSSSFIPFIVAEEDVCSEIRLLETAFEPTEIDSVNSESSRKPEVRNQAMNFIHEMGWLLHRTQLKSRPGDLGPNPDLFPLERFKWLVAFSMDRDWHAVVKKLLDVLLDGRAVGFGDYPSLRFALSEMGLLHRAVRRSSRPLVGLLIGYNSKAFFDTLESEEESDPGFLFRPDAKGPAGLTPLHIAAGKDGSEEIIDALTDDPAKVGLEAWKSARDSTGSTPEDYARLRGHYSYIHLVQKKINQRTTSSGQVILDIPRILSENSTNLKSDVNDQLTTEFKAGSFELNCPVRQNCGLCARKVGAHQGVGRSLVYRPAMLSMVAVAAVCVCVALLFKSSPEVLYVFQPFRWESLEFGTS 1028
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 4379669 4385157 + Conep18aG0079700.1 Cone18ag0772 457733

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone18ag0772 1028 MobiDBLite consensus disorder prediction 95 126 - -
Cone18ag0772 1028 MobiDBLite consensus disorder prediction 410 469 - -
Cone18ag0772 1028 FunFam Squamosa promoter-binding-like protein 14 156 225 - -
Cone18ag0772 1028 Pfam SBP domain 164 237 IPR004333 GO:0003677(InterPro)
Cone18ag0772 1028 Gene3D - 772 922 IPR036770 -
Cone18ag0772 1028 ProSiteProfiles Zinc finger SBP-type profile. 161 238 IPR004333 GO:0003677(InterPro)
Cone18ag0772 1028 MobiDBLite consensus disorder prediction 373 393 - -
Cone18ag0772 1028 Gene3D - 155 225 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Cone18ag0772 1028 MobiDBLite consensus disorder prediction 332 393 - -
Cone18ag0772 1028 MobiDBLite consensus disorder prediction 423 469 - -
Cone18ag0772 1028 SUPERFAMILY Ankyrin repeat 796 908 IPR036770 -
Cone18ag0772 1028 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 33 1023 IPR044817 GO:0003677(InterPro)
Cone18ag0772 1028 MobiDBLite consensus disorder prediction 228 255 - -
Cone18ag0772 1028 SUPERFAMILY SBT domain 163 243 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone18ag0772 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0385 Cone-Chr17:1823945 Cone18ag0772 Cone-Chr18:4379669 0 dispersed
Cone18ag0772 Cone-Chr18:4379669 Cone2ag0792 Cone-Chr2:33927478 1.21E-30 dispersed
Cone11ag0721 Cone-Chr11:4985716 Cone18ag0772 Cone-Chr18:4379669 0 wgd
Cone18ag0772 Cone-Chr18:4379669 Cone20ag1033 Cone-Chr20:7194361 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone17ag0385 . 186 1025 SBP-box Gene Family AT2G47070 54.9 4.2e-239 825.1
Cone18ag0772 . 188 1028 SBP-box Gene Family AT2G47070 53.0 7.3e-236 814.3
Cone20ag1033 . 196 983 SBP-box Gene Family AT2G47070 57.1 9.6e-236 813.9
Cone11ag0721 . 1 840 SBP-box Gene Family AT2G47070 52.7 6.2e-235 811.2
Cone18ag0772 . 25 1028 SBP-box Gene Family AT3G60030 50.8 3.2e-257 885.6
Cone17ag0385 . 21 1025 SBP-box Gene Family AT3G60030 52.3 1.9e-254 876.3
Cone20ag1033 . 30 983 SBP-box Gene Family AT3G60030 53.5 6.2e-253 871.3
Cone11ag0721 . 1 840 SBP-box Gene Family AT3G60030 52.4 4.1e-228 788.9
Cone4ag0183 . 26 579 SBP-box Gene Family AT5G18830 52.2 1.4e-163 574.3
Cone14ag0513 . 11 271 SBP-box Gene Family AT1G02065 51.1 8.2e-43 171.4
Cone13ag0543 . 12 165 SBP-box Gene Family AT2G42200 53.5 2.1e-37 154.1
Cone17ag0385 . 186 1025 SBP-box Gene Family AT2G47070 54.9 4.2e-239 825.1
Cone18ag0772 . 188 1028 SBP-box Gene Family AT2G47070 53.0 7.3e-236 814.3
Cone20ag1033 . 196 983 SBP-box Gene Family AT2G47070 57.1 9.6e-236 813.9
Cone11ag0721 . 1 840 SBP-box Gene Family AT2G47070 52.7 6.2e-235 811.2
Cone4ag0183 . 26 579 SBP-box Gene Family AT5G18830 52.2 1.4e-163 574.3
Cone14ag0513 . 11 271 SBP-box Gene Family AT1G02065 51.1 8.2e-43 171.4
Cone13ag0543 . 12 165 SBP-box Gene Family AT2G42200 53.5 2.1e-37 154.1
Cone18ag0772 . 25 1028 SBP-box Gene Family AT3G60030 50.8 3.2e-257 885.6
Cone17ag0385 . 21 1025 SBP-box Gene Family AT3G60030 52.3 1.9e-254 876.3
Cone20ag1033 . 30 983 SBP-box Gene Family AT3G60030 53.5 6.2e-253 871.3
Cone11ag0721 . 1 840 SBP-box Gene Family AT3G60030 52.4 4.1e-228 788.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003053 3 3 4 4 3 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 0 1 2 1 2 2 2 52
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45186 PF15341 SLX9 2.50E-10 No_clan Cone TF