Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone18ag0774 ATGTTGAAGTTCACAGCTGAGGAGTTGCGTAGGATCATGGACTTCAAACACAACATCCGTAACATGTCTGTTATTGCTCATGTTGACCACGACTCCATGTTCTTTACGAGATGCTTTGCTCGAGTGTACCCTCTTCTTACGAGAAAGTTCCGTTTCTTCTCAAATGCTTCAAGGAAAATCATAGATTTAGAAAATGAAGTGTTTTCTTACTCAGTATCTCATATAAATTCTTCCACTACACTTAAGCCATCGCCTATTTTCAGTGATGATAGACTTCATATAGGTGGTTATAATATCCAGCTTGTGGACCATGATACTTGGTGTGTCTCATCCACTTTAGCACAAGTATGGGGAAAATCAGAGCAGGATAGGGCTGAATCTAATTCAAAAACAAGGATTTTATCCGAGGAAGACATTCATGACCCATTTAATTATGGGTCTGCTACTAATATAGATGACGGCCCTGATTTCGATGACATTGATAGTATGAGGATCCGAGGAAATTTGTTCTATAAACTTGACCGGAATTCGAAGGAGTATGAAGAGTACAGTTTTGACTTCCACAGAAAGAAAAAGTCTTCAAAGAAAAAAGAAGATGACAACACAAAGCAAAAGGAGGACAACCGGATGATGAACTCAACATTAGCAAGTGAAAAAGTTCCTCAAATCTCAAAGGAAAAATTTATTATCATAGAAAAGGATACTATTAGTAGTGCTTGTCTTGATAACAAGAGGCAAGAAAGAGTTCCAACTTTTAACCAGCTTACAGCTCCTTACCATGAACCCTTTTGCCTTGACATTTTCATATCAAAAGGCTCTGTTCGAGCTTGTGTCATTCATAGGTTGACCAGTAAGGTCGTTGCCGTTGCTCATTCGATTTCTAAAGATATGAAATTTGACCTTAATTCAAGGAGGGATTCAACTGCTTGTGCTGCTGTAGGGGAAGTTTTGGCTCAGAGAGCATTAGCAGATGATATTCATGATGTGGTTTATACACCAAGGAAAGGAGATAGAATGGAAGGGAAGCTTCAAATAGTACTAGACTCTATCATTAATCATGGGATTAATGTGAAAGTGAAGCTTAAGCAGAGAAGACCTATGAAAGCTCGGTCTATATGTGTAAGGGATATGTTTTACAAGATTTATTTTATAATCCAATGGTCCACTCATACCGATTCTCTTGTTGCTGCTGCTGGTATCATTGCACGAGAGGTTGCCGGTGATGTGCGTATGACAGATACCCGAGCAGGTGAGGCAGAATGTGGTATTACTATTAAGTCTACTGCTATCTCTCTCTACTATGAGATGACTGATGAGTCATTGAAGAGCTACAAGGGTGAGAGAAATGGAAAAGAGTACCTCATCAATCTCATTGACGCACTCGGACATGTTGACTTCTCCTCTGAGGTGATGTGCAACTTCCTTGAGCTTCAAGTGGATGGGCAGGAAGCCTACCAAACATTCCAGATGGTTATTAAGAATGCTAATGTGATCATGGCAACATGTGAAGATCTCCTTCTTGGTGATGTGCAAGTCTACCCCGAGAAAGTGACTCTTGCTTTCCCTGCAGGTCTGCATTGTTGGGCCTTTACCCTGACAAACTTTTGCTAA 1611 40.16 MLKFTAEELRRIMDFKHNIRNMSVIAHVDHDSMFFTRCFARVYPLLTRKFRFFSNASRKIIDLENEVFSYSVSHINSSTTLKPSPIFSDDRLHIGGYNIQLVDHDTWCVSSTLAQVWGKSEQDRAESNSKTRILSEEDIHDPFNYGSATNIDDGPDFDDIDSMRIRGNLFYKLDRNSKEYEEYSFDFHRKKKSSKKKEDDNTKQKEDNRMMNSTLASEKVPQISKEKFIIIEKDTISSACLDNKRQERVPTFNQLTAPYHEPFCLDIFISKGSVRACVIHRLTSKVVAVAHSISKDMKFDLNSRRDSTACAAVGEVLAQRALADDIHDVVYTPRKGDRMEGKLQIVLDSIINHGINVKVKLKQRRPMKARSICVRDMFYKIYFIIQWSTHTDSLVAAAGIIAREVAGDVRMTDTRAGEAECGITIKSTAISLYYEMTDESLKSYKGERNGKEYLINLIDALGHVDFSSEVMCNFLELQVDGQEAYQTFQMVIKNANVIMATCEDLLLGDVQVYPEKVTLAFPAGLHCWAFTLTNFC 536
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 4400631 4403644 + Conep18aG0079900.1 Cone18ag0774 457735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone18ag0774 536 Gene3D - 242 356 - -
Cone18ag0774 536 PANTHER 39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL 159 358 IPR005484 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)|GO:0008097(PANTHER)
Cone18ag0774 536 Pfam Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast 264 356 IPR005484 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Cone18ag0774 536 Gene3D - 387 473 IPR027417 -
Cone18ag0774 536 MobiDBLite consensus disorder prediction 191 211 - -
Cone18ag0774 536 Pfam Elongation factor Tu GTP binding domain 388 471 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cone18ag0774 536 MobiDBLite consensus disorder prediction 191 207 - -
Cone18ag0774 536 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 388 535 IPR027417 -
Cone18ag0774 536 CDD Ribosomal_L18_L5e 259 355 - -
Cone18ag0774 536 SUPERFAMILY Translational machinery components 244 355 - -
Cone18ag0774 536 Gene3D - 474 536 IPR027417 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone18ag0774 Cone-Chr18:4400631 Cone3ag1479 Cone-Chr3:33478279 1.02E-64 dispersed
Cone18ag0774 Cone-Chr18:4400631 Cone7ag0437 Cone-Chr7:1953297 1.37E-23 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone18ag0774 K02881 - csv:101213193 325.479