Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone18ag0777 ATGGAAGCCGTCGCTACAACGAGCGCTGTGCCGCAGAATAGGCGGCGGGGTCCCAACACGGTGGAAGAGAAGTTGGAGTTCGATACGACGGAAGGGGTGGAGCCAATCTTGAGCTTCGACCAGATGGGAATCAAGGACGATTTGCTCCGTGGAATCTACGCCTACGGTTTCGAGAAGCCCTCGGCTATTCAGCAGAGGGCTGTTAGGCCCATTATTGAGGGTCGCGATGTCATTGCACAGGCTCAATCCGGTACTGGCAAGACGTCCATGATTGCCCTCACCGTTTGCCAGATGGTTGATACCGCTAATAGAGAGGTCCAGGCTCTGATCTTGTCTCCAACGAGGGAATTGGCAACTCAGACAGAGAAAGTTATACTGGCAATTGGTGATTACATAAATATACAAGCACATGCTTGCATTGGGGGTAAAAGTGTTGGTGAAGATATTAGAAAGCTAGAATATGGAGTACATGTGGTGTCTGGAACTCCAGGTAGAGTTTGTGACATGATCAAGAGGAGAACATTGCGTACCAGAGCCATTAAATTATTAATTCTTGATGAATCTGATGAGATGTTGAGCAGAGGGTTCAAGGACCAAATCTATGATGTGTATAGATATCTCCCACCAGATCTTCAGGTTTGTTTGATATCTGCCACCCTTCCTCATGAAATTTTGGAGATCACAAACAAGTTTATGACAGATCCTGTAAGGATCCTTGTGAAGCGTGATGAGTTGACTTTGGAGGGGATTAAGCAATTTTTCGTTGCAGTCGAAAAAGAAGAGTGGAAATTTGATACTTTATGTGATCTCTACGATACCCTTACCATTACACAGGCTGTTATTTTCTGCAACACCAAAAGAAAGGTGGAATGGCTGACAGAGAAGATGCGTAATAATAACTTCACTGTTTCACAAATGCATGGAGACATGCCTCAAAGGGAGCGAGATGCAATTATGGGCGAGTTTCGGTCTGGCACCACCCGTGTTCTGATAACTACGGATGTTTGGGCAAGAGGGCTTGATGTTCAGCAGGTTTCCCTAGTGATTAACTATGACCTTCCCAACAACCGAGAACTTTACATTCACAGGATTGGTCGATCTGGTCGTTTTGGACGCAAGGGTGTTGCAATAAACTTCGTCAAGAGTGATGACATCAAAATCCTTAGAGACATCGAACAATATTACAGTACCCAGATTGATGAAATGCCCATGAATGTTGCTGATTTGATCTGA 1233 45.09 MEAVATTSAVPQNRRRGPNTVEEKLEFDTTEGVEPILSFDQMGIKDDLLRGIYAYGFEKPSAIQQRAVRPIIEGRDVIAQAQSGTGKTSMIALTVCQMVDTANREVQALILSPTRELATQTEKVILAIGDYINIQAHACIGGKSVGEDIRKLEYGVHVVSGTPGRVCDMIKRRTLRTRAIKLLILDESDEMLSRGFKDQIYDVYRYLPPDLQVCLISATLPHEILEITNKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVEWLTEKMRNNNFTVSQMHGDMPQRERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQIDEMPMNVADLI 410
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 4413828 4417101 - Conep18aG0080200.1 Cone18ag0777 457738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone18ag0777 410 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 249 410 IPR001650 -
Cone18ag0777 410 Pfam DEAD/DEAH box helicase 62 225 IPR011545 GO:0003676(InterPro)|GO:0005524(InterPro)
Cone18ag0777 410 Gene3D - 242 410 IPR027417 -
Cone18ag0777 410 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 37 65 IPR014014 GO:0003724(InterPro)
Cone18ag0777 410 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 31 395 - GO:0003723(PANTHER)|GO:0003724(PANTHER)|GO:0003729(PANTHER)|GO:0005730(PANTHER)|GO:0071013(PANTHER)
Cone18ag0777 410 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 105 393 IPR027417 -
Cone18ag0777 410 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 68 238 IPR014001 -
Cone18ag0777 410 SMART helicmild6 290 371 IPR001650 -
Cone18ag0777 410 SMART ultradead3 56 253 IPR014001 -
Cone18ag0777 410 Pfam Helicase conserved C-terminal domain 263 371 IPR001650 -
Cone18ag0777 410 FunFam Eukaryotic initiation factor 4A-III 244 410 - -
Cone18ag0777 410 Gene3D - 22 241 IPR027417 -
Cone18ag0777 410 CDD DEADc_EIF4AIII_DDX48 39 239 - -
Cone18ag0777 410 FunFam Eukaryotic initiation factor 4A-III 20 241 - -
Cone18ag0777 410 CDD SF2_C_DEAD 250 380 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0411 Cone-Chr13:3786544 Cone18ag0777 Cone-Chr18:4413828 5.28E-60 dispersed
Cone14ag0345 Cone-Chr14:1599567 Cone18ag0777 Cone-Chr18:4413828 2.03E-90 dispersed
Cone17ag0089 Cone-Chr17:476974 Cone18ag0777 Cone-Chr18:4413828 4.47E-177 dispersed
Cone18ag0777 Cone-Chr18:4413828 Cone7ag1231 Cone-Chr7:9130316 3.13E-177 dispersed
Cone11ag0733 Cone-Chr11:5092891 Cone18ag0777 Cone-Chr18:4413828 4.32E-295 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone18ag0777 K13025 - csv:101222664 766.533