Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone18ag0786 | ATGGGTGGAAATTCACCATGCGCTTCCTGCAAGTTGCTAAGGCGGCGATGCGCCAAAGACTGCATCTTCGCTCCTTACTTTCCCTCCGACGATCCCCACAAGTTCGCCATTGTTCATAAGGTCTTTGGGGCTAGCAATGTCAGCAAAATGTTACAGGAGCTTCCGGTTCAGCAGAGACCGGATGCGGTGAGCAGTTTAGTATACGAAGCGAATGCGAGGGTGAGAGACCCGGTTTACGGGTGTGTAGGGGCCATATCTTTCCTGCAAAATCAGGTGGCTCAACTACAAATGCAGCTTGCTATGGCTCAGGCGGAGATCCTGTGCATCCAAATGCAGCAAGAGCCTCATATGTTGCCTATCTCACTTGATCAGATCAACGACTCCGATCATGATCCGAATTCGTATTTTCTCCAGAACACGACTCTCCCAGTTCAGTGTCTCAACTTCTCCTCTTCTTCTTCTACTAGTAATGTAATCCTTCATGATTCTCTTAAGAGGGAGACCTTTTTTGGACATGACTTGGTCTCTTGA | 531 | 48.4 | MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRPDAVSSLVYEANARVRDPVYGCVGAISFLQNQVAQLQMQLAMAQAEILCIQMQQEPHMLPISLDQINDSDHDPNSYFLQNTTLPVQCLNFSSSSSTSNVILHDSLKRETFFGHDLVS | 176 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 18 | 4481951 | 4482669 | + | Conep18aG0081200.1 | Cone18ag0786 | 457747 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone18ag0786 | 176 | Coils | Coil | 85 | 105 | - | - | |
| Cone18ag0786 | 176 | ProSiteProfiles | LOB domain profile. | 5 | 106 | IPR004883 | - | |
| Cone18ag0786 | 176 | Pfam | Lateral organ boundaries (LOB) domain | 6 | 103 | IPR004883 | - | |
| Cone18ag0786 | 176 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 4 | 128 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone18ag0786 | Cone-Chr18:4481951 | Cone7ag0064 | Cone-Chr7:276888 | 1.04E-68 | dispersed | |
| Cone1ag1647 | Cone-Chr1:57740210 | Cone18ag0786 | Cone-Chr18:4481951 | 2.23E-79 | wgd | |
| Cone11ag0741 | Cone-Chr11:5157765 | Cone18ag0786 | Cone-Chr18:4481951 | 1.70E-116 | wgd | |
| Cone18ag0786 | Cone-Chr18:4481951 | Cone4ag0070 | Cone-Chr4:352109 | 3.49E-65 | wgd | |
| Cone18ag0786 | Cone-Chr18:4481951 | Cone5ag0176 | Cone-Chr5:730885 | 1.03E-66 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 45187 | PF02186 | TFIIE_beta | 7.20E-09 | CL0123 | Cone | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone18ag0786 | - | - | - | 0.0 |