Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone18ag0796 ATGGCGGTTCCGAAGCTATCTCCTCTCTATGTTGCCTTCTTCTTCTTCATCGCAAGAGCTTCCCTGATCGTCGAGGCAATATCTTTTTCTTCTCCATCAAATGTGAAGCTTCTGCTCGGAGATATCAAAGCCTCCCTACAAGGTAACTCAGAAAACCTTCTCTTGAGCTCTTGGAACTTGTCTATACCCGCCTGTCAATGGAGAGGACTCAAATGGGTCTTCCCCGATGGCTCTCCTTTACTCTGCAGGGACCCTTCTTCGCCGCAGTGGAGCAACCTTTCTCTCTCTAAAGACCCTTCTCTTCATCTTCTCGCCATTCAGCTTCCTTCTGCTAATCTCACCGGTTCATTACCTAGAGAGCTCACTGAGTTCACTATGCTTAAAAGTCTGTACCTCAACTTCAATTATTTAAGCGGAAAAATCCCTCTTGAACTAGGCTATAGCTCCTCCCTCTCTGATATTGATTTGAGTAGCAATTTGTTAAGTGGATCTCTGCCTCCATCGATCTGGAATCTCTGTGATAGACTTGCTTCTTTGAGGCTTCGTAGTAATTCACTTGCTGGGTCCATCTCCGAACCCGCGTTACCCAATTCAACTTGCAACAGCTTGCAGGTTTTGGATTTAAGTGACAATAAGTTTTCAGGTAGTTTCCCTGAATTCATAACCAGGTTTGAGAATCTTAAAGAGATTGATCTTGCGAATAATTTTTTGTCCGGTTCAATTCCACAGAGCTTGTCGGTATTAAAATTAGAAAAATTGAATCTCGTGCACAATAATTTTACGGGAGCTTTGCCAGTTTTTAATGATTCTAAGTTTGGGGTGGAGGCTTTTGAAAGGAACGATCCCGGACTATGTGGGTTTCCCTTGAAAAGTTGTAGTGAGAGTTCAGGGTTGAGTTCGGGTGCAATTGCAGGTATTGTAATAGGCCTTATGACTGGGACTGTGGTTTTGTCATCCTTGCTGATCGGTTATATGCAAAATAAGAAGAGGAAAAGTAGAGATGAAAGCGAAGGTGAGTTTGAGGAAGGAGAAGATGAAGAAACCAATAGTGAGGGTGGTGAGGGTAGGCTAATTTTGTTTCCAGGTGGCGAGCATTTGACTCTAGAAGATGTGTTAAATGCGACGGGACAGATAATGGAGAAGACTAGCTATGGGACTGTGTACAAGGCTAAGCTTACTGATGGAAGTACAATTGCTCTGAGGTTATTGAGGGAAGGTAGTTGTAAAGATAGGAGCTCTTGGTTACCCGTGATAAAGCAGCTTGGAAAGGTTCGGCATGAGAACCTGATTCCGTTGAGAGCTTTCTATCAGGGGAAGAGAGGAGAAAAGCTACTCATTTATGACTTTTTGCCTCAGAGAACCCTTCACGATCTTTTACATGAATCCAGAGTTGGAAAACCCGTATTGAACTGGGCTAGGCGTCACAAGATTGTGCTGTGCATAGCCCGAGGACTAGCTTTTCTTCATTCTGGTGTTGATACACCCATTACACATGGGAATGTGAGATCAAAAAATGTTCTAGTTGATGACTTTTTTGTTGCCTGTCTGACTGACTTTGGGCTTGACAAGCTAATGATCCCTGCTGTAGCTGATGAAGTAGTGGCACTTGCAAAAATGGATGGCTATAAGGCCCCAGAGCTTCAAAAGATGAAGAAATGCACTTCAAGGACAGACGTTTATGCATTTGGTATTTTGTTATTGGAGACTTTGATTGGCAAGAAACCGGGGAAAAATGGGAGAAGTGGCGAGTTCGTGGATTTCCCCTCCATGGTGAAGGTCGCTGTTTTGGAGGAGACTACAATGGAAATTTTTGATGTGGAGGTTTTGAAAGGCATAAAGAATCCCATGGAAGACGGGTTAATTCAAGCATTGAAGCTTGCTATGGGTTGCTGTGCTCCAGTCGCCACGGTGAGACCAAGCATGGATGAAGTTGTGAAGCAGTTGGAGGACAATAGACCAAGGAACAGGTCTGCTTTGTATAGCCCTTCAGAGACTAGGAGTGAAATTGGTACCCCATTTTGA 2022 43.87 MAVPKLSPLYVAFFFFIARASLIVEAISFSSPSNVKLLLGDIKASLQGNSENLLLSSWNLSIPACQWRGLKWVFPDGSPLLCRDPSSPQWSNLSLSKDPSLHLLAIQLPSANLTGSLPRELTEFTMLKSLYLNFNYLSGKIPLELGYSSSLSDIDLSSNLLSGSLPPSIWNLCDRLASLRLRSNSLAGSISEPALPNSTCNSLQVLDLSDNKFSGSFPEFITRFENLKEIDLANNFLSGSIPQSLSVLKLEKLNLVHNNFTGALPVFNDSKFGVEAFERNDPGLCGFPLKSCSESSGLSSGAIAGIVIGLMTGTVVLSSLLIGYMQNKKRKSRDESEGEFEEGEDEETNSEGGEGRLILFPGGEHLTLEDVLNATGQIMEKTSYGTVYKAKLTDGSTIALRLLREGSCKDRSSWLPVIKQLGKVRHENLIPLRAFYQGKRGEKLLIYDFLPQRTLHDLLHESRVGKPVLNWARRHKIVLCIARGLAFLHSGVDTPITHGNVRSKNVLVDDFFVACLTDFGLDKLMIPAVADEVVALAKMDGYKAPELQKMKKCTSRTDVYAFGILLLETLIGKKPGKNGRSGEFVDFPSMVKVAVLEETTMEIFDVEVLKGIKNPMEDGLIQALKLAMGCCAPVATVRPSMDEVVKQLEDNRPRNRSALYSPSETRSEIGTPF 673
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 4626967 4629513 + Conep18aG0082200.1 Cone18ag0796 457757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone18ag0796 673 Pfam Leucine rich repeat 202 260 IPR001611 GO:0005515(InterPro)
Cone18ag0796 673 Pfam Protein tyrosine and serine/threonine kinase 379 648 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone18ag0796 673 FunFam Leucine-rich repeat receptor-like protein kinase 200 292 - -
Cone18ag0796 673 MobiDBLite consensus disorder prediction 653 673 - -
Cone18ag0796 673 MobiDBLite consensus disorder prediction 332 355 - -
Cone18ag0796 673 MobiDBLite consensus disorder prediction 654 673 - -
Cone18ag0796 673 Pfam Leucine Rich Repeat 150 172 IPR001611 GO:0005515(InterPro)
Cone18ag0796 673 Pfam Leucine Rich Repeat 127 146 IPR001611 GO:0005515(InterPro)
Cone18ag0796 673 ProSiteProfiles Protein kinase domain profile. 373 673 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone18ag0796 673 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 103 656 IPR052451 -
Cone18ag0796 673 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 96 190 - -
Cone18ag0796 673 Gene3D Ribonuclease Inhibitor 175 293 IPR032675 -
Cone18ag0796 673 Gene3D Transferase(Phosphotransferase) domain 1 450 666 - -
Cone18ag0796 673 SUPERFAMILY L domain-like 49 266 - -
Cone18ag0796 673 Gene3D Ribonuclease Inhibitor 35 174 IPR032675 -
Cone18ag0796 673 Gene3D Phosphorylase Kinase; domain 1 360 449 - -
Cone18ag0796 673 SUPERFAMILY Protein kinase-like (PK-like) 380 648 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone18ag0796 Cone-Chr18:4626967 Cone19ag1424 Cone-Chr19:9287649 1.84E-65 dispersed
Cone1ag1640 Cone-Chr1:57709724 Cone18ag0796 Cone-Chr18:4626967 1.87E-65 wgd
Cone11ag0811 Cone-Chr11:6608027 Cone18ag0796 Cone-Chr18:4626967 0 wgd
Cone18ag0796 Cone-Chr18:4626967 Cone5ag0167 Cone-Chr5:695792 3.18E-69 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82325 PF07738 Sad1_UNC 1.30E-36 CL0202 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone18ag0796 - - - 0.0