Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone18ag0800 | ATGGTTCATGAAGAAGGCCTCATTGACGACTGTAGCTCGAAAAAGCTGTGTCGGGTGTGCGGCGATGAGATTGGACTGGTCAATGAAAATGGCCAGTTGTTTGTAGCTTGTCTTCATTGTGCTTTCCCGGTTTGCCGCCCTTGTTATGACTATGAAAGGAGAGAAGGCAATCAGTGCTGCCCTAACTGTAATACTCGCTATATGCGTCACAAAGGTTGTCCTAGAGTTGCTGGCGACGAGGAGGAGAATTTCGATGCAGATGATTTTGATGATGAGTTTCCTCCAAAGTATCTCAGGGAAGAGTTGGAACCTCAACATGGAGTTCTCAATCATTCGGAAAATGGGGACTACAATCAAAGGCCGTTGCATCAAAACGGTCCAAGTTCCTTCTCTGTTGCAGGCAGTGTCACTGGTAAGGATTTAGAAGGTGATCAAAAAGAGGCCTATACTAATGCTGAATGGAAAGAGAGAGTAGATAAATGGAAAGTCAGGCAAGAAAAGAAAGGCTTACTCAACAAAGATGATGGAAACAATGATCAAGGAGATGAAGATGATTACCTAATGGCTGAAGCTAGACAGCCCCTATGGAGAAAAGTCCCAGTCTCTTCAAGCAAAATCAGTCCATACCGCATAGTCATTGTTCTCCGCCTCATAATCCTCGGCTTCTTCTTCCATTTCCGGATCCTAACTCCTGCCTATGATGCTTTTCCCTTATGGCTCATATCTGTAATATGTGAAATATGGTTTGCACTCTCTTGGATACTTGACCAATTCCCAAAATGGAACCCAATAAACCGGGAAACTTACTTGGACCGGCTTTCAATGAGGTTCGAGCGGGAAGGTGAGCCAAATAGCTTAGCGCCGGTTGATGTCTATGTGAGCACAGTGGACCCGCTTAAGGAGCCACCTATTATAACAGCAAATACGGTACTTTCGATCCTGTCTGTTGATTATCCAGTGGATAAGGTGACATGTTATGTATCGGACGATGGTGCTTCGATGCTTCTTTTTGATTCGTTGTCTGAAACTGCTGAGTTTGCGAGGATGTGGGTCCCTTTTTGTAAGAAGTACGGTGTTGAGCCGAGGGCGCCTGAGTTTTACTTCTCACAGAAGATTGATTACTTAAAAGATAAGGTGCTTCCAAGCTTTGTCAAGGAGCGCAGAGCAATGAAGAGAGAGTATGAAGAGTTCAAAGTGAGGATAAATGCATTGGTGGCAAAGGCTCAGAAGAAACCCGAAGAAGGATGGGTTATGCAAGATGGCACTCCTTGGCCGGGGAACAACACTCGTGATCATCCCGGAATGATTCAGGTTTATCTAGGAAGCGAGGGTGCACTAGATGTAGAAGGCAAGGAATTACCACGACTCGTGTACATTTCCCGTGAGAAACGACCTGGCTATCAACATCACAAGAAAGCCGGTGCTATGAATGCTCTAGTTCGAGTTTCTGCCGTGCTTACAAATGCTCCTTTCATGCTGAATCTCGATTGTGATCACTATATAAACAACAGCAAGGCCTTAAGAGAAGCAATGTGCTTTCTAATGGACCCTCAGCTGGGTAAGAAGCTCTGCTATGTCCAATTCCCACAAAGATTTGACGGTATAGATCGCAACGATAGATATGCTAATCGCAATATTGTCTTTTTCGACATTAACATGAGAGGCTTAGATGGAATCCAAGGCCCGGTGTATGTCGGGACAGGATGTGTCTTTAATCGGCAGGCCTTGTACGGATATGACCCGCCCGTTTCAGAGAAACGGCCCAAGATGACATGTGATTGCTGGCCTTCATGGTGCTGCTGTTGTTGTGGTGGTTCAAGGAAGTATAAGTCAAAGAAGAAAGTGGAAAGCAGAGGTTTGCTTGGTGTGCTCCACTCGAAGAAGAAGAAAATGATGGGGAAGAATTATGTCCGGAAAGGATCTTCTGGACCGGTTTTTGATCTTGAAGAGATTGAAGAAGGGCTTGAAGGCTATGATGAGTTGGAGAAATCATCTCTCATGTCACAGAAGAATTTCGAGAAACGATTCGGTCAGTCTCCGGTTTTTATTGCATCAACTCTTATGGAAGATGGGGGTCTACCTGAAGGAACTAATAGTAGTGGATCACTCATTAAGGAGGCTATTCATGTCATAAGCTGTGGATATGAAGAGAAAACTGAATGGGGCAAAGAGATTGGTTGGATTTATGGTTCGGTTACGGAGGATATCTTAACGGGCTTCAAAATGCATTGCAGAGGATGGAAATCGGTTTATTGCATGCCAAAGAGGCCGGCTTTCAAGGGATCAGCCCCGATAAATCTGTCGGACCGGTTGCACCAAGTTCTTAGATGGGCTCTAGGCTCAGTTGAAATTTTCCTTAGCCGGCATTGCCCTTTATGGTATGGCTATGGAGGGAAATTAAAATGGCTAGAGAGGCTTGCTTACATAAACACCATTGTCTATCCTTTCACTTCCATCCCCTTACTCGCCTATTGCACTATTCCCGCTGTTTGTCTTCTCACTGGGAAATTCATCGTCCCCACTCTAAACAACTTTGCTAGCATATGGTTTATGGCTCTATTCTTATCCATCATTACAACGTCCATTTTAGAGCTTAGATGGAGTAACGTGAGCATTGAGGATTTATGGCGAAACGAGCAATTTTGGGTCATAGGAGGTGTCTCTGCTCATCTTTTTGCCGTTTTCCAAGGCCTTCTTAAGGTTCTTGCTGGTGTAGATACTAACTTTACAGTGACAGCAAAAGCAGCAGATGATACCGAATTTGGTGATCTCTACATCTTCAAATGGACTACTCTTCTTATACCGCCCACTACTTTGATCATCTTGAACATGGTGGGAGTCGTGGCCGGAGTTTCTGATGCTATAAACAATGGATATGGTTCGTGGGGCCCACTTTTTGGAAAACTGTTTTTCGCCTTCTGGGTTATTGTTCATCTATATCCTTTCCTCAAAGGTTTGATGGGTAGGCAGAATAGGACACCAACTATTGTGGTTTTATGGTCAGTCCTTCTTGCTTCAATTTTTTCATTGATTTGGGTTAGGATTGATCCTTTCTTGCCCAAGCAAACTGGTCCTGTTCTTAAACAATGTGGAGTAGAGTGCTAG | 3105 | 44.32 | MVHEEGLIDDCSSKKLCRVCGDEIGLVNENGQLFVACLHCAFPVCRPCYDYERREGNQCCPNCNTRYMRHKGCPRVAGDEEENFDADDFDDEFPPKYLREELEPQHGVLNHSENGDYNQRPLHQNGPSSFSVAGSVTGKDLEGDQKEAYTNAEWKERVDKWKVRQEKKGLLNKDDGNNDQGDEDDYLMAEARQPLWRKVPVSSSKISPYRIVIVLRLIILGFFFHFRILTPAYDAFPLWLISVICEIWFALSWILDQFPKWNPINRETYLDRLSMRFEREGEPNSLAPVDVYVSTVDPLKEPPIITANTVLSILSVDYPVDKVTCYVSDDGASMLLFDSLSETAEFARMWVPFCKKYGVEPRAPEFYFSQKIDYLKDKVLPSFVKERRAMKREYEEFKVRINALVAKAQKKPEEGWVMQDGTPWPGNNTRDHPGMIQVYLGSEGALDVEGKELPRLVYISREKRPGYQHHKKAGAMNALVRVSAVLTNAPFMLNLDCDHYINNSKALREAMCFLMDPQLGKKLCYVQFPQRFDGIDRNDRYANRNIVFFDINMRGLDGIQGPVYVGTGCVFNRQALYGYDPPVSEKRPKMTCDCWPSWCCCCCGGSRKYKSKKKVESRGLLGVLHSKKKKMMGKNYVRKGSSGPVFDLEEIEEGLEGYDELEKSSLMSQKNFEKRFGQSPVFIASTLMEDGGLPEGTNSSGSLIKEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCRGWKSVYCMPKRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPLWYGYGGKLKWLERLAYINTIVYPFTSIPLLAYCTIPAVCLLTGKFIVPTLNNFASIWFMALFLSIITTSILELRWSNVSIEDLWRNEQFWVIGGVSAHLFAVFQGLLKVLAGVDTNFTVTAKAADDTEFGDLYIFKWTTLLIPPTTLIILNMVGVVAGVSDAINNGYGSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVLWSVLLASIFSLIWVRIDPFLPKQTGPVLKQCGVEC | 1034 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
18 | 4711339 | 4715849 | + | Conep18aG0082600.1 | Cone18ag0800 | 457761 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone18ag0800 | 1034 | Pfam | Zinc-binding RING-finger | 13 | 83 | IPR027934 | - | |
Cone18ag0800 | 1034 | CDD | mRING-HC-C4C4_CesA | 15 | 66 | - | - | |
Cone18ag0800 | 1034 | PANTHER | X-BOX TRANSCRIPTION FACTOR-RELATED | 198 | 1003 | - | GO:0005802(PANTHER)|GO:0005886(PANTHER)|GO:0009833(PANTHER)|GO:0016759(PANTHER)|GO:0030244(PANTHER) | |
Cone18ag0800 | 1034 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 5 | 92 | IPR013083 | - | |
Cone18ag0800 | 1034 | MobiDBLite | consensus disorder prediction | 111 | 135 | - | - | |
Cone18ag0800 | 1034 | SUPERFAMILY | RING/U-box | 12 | 84 | - | - | |
Cone18ag0800 | 1034 | SUPERFAMILY | Nucleotide-diphospho-sugar transferases | 302 | 857 | IPR029044 | - | |
Cone18ag0800 | 1034 | Coils | Coil | 387 | 407 | - | - | |
Cone18ag0800 | 1034 | Pfam | Cellulose synthase | 289 | 1027 | IPR005150 | GO:0016020(InterPro)|GO:0016760(InterPro)|GO:0030244(InterPro) | |
Cone18ag0800 | 1034 | FunFam | Cellulose synthase | 406 | 580 | - | - | |
Cone18ag0800 | 1034 | Gene3D | Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 395 | 581 | IPR029044 | - | |
Cone18ag0800 | 1034 | MobiDBLite | consensus disorder prediction | 108 | 148 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone11ag0803 | Cone-Chr11:6511721 | Cone18ag0800 | Cone-Chr18:4711339 | 0 | dispersed | |
Cone18ag0800 | Cone-Chr18:4711339 | Cone4ag1486 | Cone-Chr4:11633123 | 0 | dispersed | |
Cone6ag0945 | Cone-Chr6:4926527 | Cone18ag0800 | Cone-Chr18:4711339 | 0 | transposed | |
Cone11ag0802 | Cone-Chr11:6510662 | Cone18ag0800 | Cone-Chr18:4711339 | 2.49E-126 | wgd | |
Cone17ag0346 | Cone-Chr17:1624001 | Cone18ag0800 | Cone-Chr18:4711339 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone18ag0800 | K10999 | - | vvi:100241197 | 1782.69 |