Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone18ag0800 ATGGTTCATGAAGAAGGCCTCATTGACGACTGTAGCTCGAAAAAGCTGTGTCGGGTGTGCGGCGATGAGATTGGACTGGTCAATGAAAATGGCCAGTTGTTTGTAGCTTGTCTTCATTGTGCTTTCCCGGTTTGCCGCCCTTGTTATGACTATGAAAGGAGAGAAGGCAATCAGTGCTGCCCTAACTGTAATACTCGCTATATGCGTCACAAAGGTTGTCCTAGAGTTGCTGGCGACGAGGAGGAGAATTTCGATGCAGATGATTTTGATGATGAGTTTCCTCCAAAGTATCTCAGGGAAGAGTTGGAACCTCAACATGGAGTTCTCAATCATTCGGAAAATGGGGACTACAATCAAAGGCCGTTGCATCAAAACGGTCCAAGTTCCTTCTCTGTTGCAGGCAGTGTCACTGGTAAGGATTTAGAAGGTGATCAAAAAGAGGCCTATACTAATGCTGAATGGAAAGAGAGAGTAGATAAATGGAAAGTCAGGCAAGAAAAGAAAGGCTTACTCAACAAAGATGATGGAAACAATGATCAAGGAGATGAAGATGATTACCTAATGGCTGAAGCTAGACAGCCCCTATGGAGAAAAGTCCCAGTCTCTTCAAGCAAAATCAGTCCATACCGCATAGTCATTGTTCTCCGCCTCATAATCCTCGGCTTCTTCTTCCATTTCCGGATCCTAACTCCTGCCTATGATGCTTTTCCCTTATGGCTCATATCTGTAATATGTGAAATATGGTTTGCACTCTCTTGGATACTTGACCAATTCCCAAAATGGAACCCAATAAACCGGGAAACTTACTTGGACCGGCTTTCAATGAGGTTCGAGCGGGAAGGTGAGCCAAATAGCTTAGCGCCGGTTGATGTCTATGTGAGCACAGTGGACCCGCTTAAGGAGCCACCTATTATAACAGCAAATACGGTACTTTCGATCCTGTCTGTTGATTATCCAGTGGATAAGGTGACATGTTATGTATCGGACGATGGTGCTTCGATGCTTCTTTTTGATTCGTTGTCTGAAACTGCTGAGTTTGCGAGGATGTGGGTCCCTTTTTGTAAGAAGTACGGTGTTGAGCCGAGGGCGCCTGAGTTTTACTTCTCACAGAAGATTGATTACTTAAAAGATAAGGTGCTTCCAAGCTTTGTCAAGGAGCGCAGAGCAATGAAGAGAGAGTATGAAGAGTTCAAAGTGAGGATAAATGCATTGGTGGCAAAGGCTCAGAAGAAACCCGAAGAAGGATGGGTTATGCAAGATGGCACTCCTTGGCCGGGGAACAACACTCGTGATCATCCCGGAATGATTCAGGTTTATCTAGGAAGCGAGGGTGCACTAGATGTAGAAGGCAAGGAATTACCACGACTCGTGTACATTTCCCGTGAGAAACGACCTGGCTATCAACATCACAAGAAAGCCGGTGCTATGAATGCTCTAGTTCGAGTTTCTGCCGTGCTTACAAATGCTCCTTTCATGCTGAATCTCGATTGTGATCACTATATAAACAACAGCAAGGCCTTAAGAGAAGCAATGTGCTTTCTAATGGACCCTCAGCTGGGTAAGAAGCTCTGCTATGTCCAATTCCCACAAAGATTTGACGGTATAGATCGCAACGATAGATATGCTAATCGCAATATTGTCTTTTTCGACATTAACATGAGAGGCTTAGATGGAATCCAAGGCCCGGTGTATGTCGGGACAGGATGTGTCTTTAATCGGCAGGCCTTGTACGGATATGACCCGCCCGTTTCAGAGAAACGGCCCAAGATGACATGTGATTGCTGGCCTTCATGGTGCTGCTGTTGTTGTGGTGGTTCAAGGAAGTATAAGTCAAAGAAGAAAGTGGAAAGCAGAGGTTTGCTTGGTGTGCTCCACTCGAAGAAGAAGAAAATGATGGGGAAGAATTATGTCCGGAAAGGATCTTCTGGACCGGTTTTTGATCTTGAAGAGATTGAAGAAGGGCTTGAAGGCTATGATGAGTTGGAGAAATCATCTCTCATGTCACAGAAGAATTTCGAGAAACGATTCGGTCAGTCTCCGGTTTTTATTGCATCAACTCTTATGGAAGATGGGGGTCTACCTGAAGGAACTAATAGTAGTGGATCACTCATTAAGGAGGCTATTCATGTCATAAGCTGTGGATATGAAGAGAAAACTGAATGGGGCAAAGAGATTGGTTGGATTTATGGTTCGGTTACGGAGGATATCTTAACGGGCTTCAAAATGCATTGCAGAGGATGGAAATCGGTTTATTGCATGCCAAAGAGGCCGGCTTTCAAGGGATCAGCCCCGATAAATCTGTCGGACCGGTTGCACCAAGTTCTTAGATGGGCTCTAGGCTCAGTTGAAATTTTCCTTAGCCGGCATTGCCCTTTATGGTATGGCTATGGAGGGAAATTAAAATGGCTAGAGAGGCTTGCTTACATAAACACCATTGTCTATCCTTTCACTTCCATCCCCTTACTCGCCTATTGCACTATTCCCGCTGTTTGTCTTCTCACTGGGAAATTCATCGTCCCCACTCTAAACAACTTTGCTAGCATATGGTTTATGGCTCTATTCTTATCCATCATTACAACGTCCATTTTAGAGCTTAGATGGAGTAACGTGAGCATTGAGGATTTATGGCGAAACGAGCAATTTTGGGTCATAGGAGGTGTCTCTGCTCATCTTTTTGCCGTTTTCCAAGGCCTTCTTAAGGTTCTTGCTGGTGTAGATACTAACTTTACAGTGACAGCAAAAGCAGCAGATGATACCGAATTTGGTGATCTCTACATCTTCAAATGGACTACTCTTCTTATACCGCCCACTACTTTGATCATCTTGAACATGGTGGGAGTCGTGGCCGGAGTTTCTGATGCTATAAACAATGGATATGGTTCGTGGGGCCCACTTTTTGGAAAACTGTTTTTCGCCTTCTGGGTTATTGTTCATCTATATCCTTTCCTCAAAGGTTTGATGGGTAGGCAGAATAGGACACCAACTATTGTGGTTTTATGGTCAGTCCTTCTTGCTTCAATTTTTTCATTGATTTGGGTTAGGATTGATCCTTTCTTGCCCAAGCAAACTGGTCCTGTTCTTAAACAATGTGGAGTAGAGTGCTAG 3105 44.32 MVHEEGLIDDCSSKKLCRVCGDEIGLVNENGQLFVACLHCAFPVCRPCYDYERREGNQCCPNCNTRYMRHKGCPRVAGDEEENFDADDFDDEFPPKYLREELEPQHGVLNHSENGDYNQRPLHQNGPSSFSVAGSVTGKDLEGDQKEAYTNAEWKERVDKWKVRQEKKGLLNKDDGNNDQGDEDDYLMAEARQPLWRKVPVSSSKISPYRIVIVLRLIILGFFFHFRILTPAYDAFPLWLISVICEIWFALSWILDQFPKWNPINRETYLDRLSMRFEREGEPNSLAPVDVYVSTVDPLKEPPIITANTVLSILSVDYPVDKVTCYVSDDGASMLLFDSLSETAEFARMWVPFCKKYGVEPRAPEFYFSQKIDYLKDKVLPSFVKERRAMKREYEEFKVRINALVAKAQKKPEEGWVMQDGTPWPGNNTRDHPGMIQVYLGSEGALDVEGKELPRLVYISREKRPGYQHHKKAGAMNALVRVSAVLTNAPFMLNLDCDHYINNSKALREAMCFLMDPQLGKKLCYVQFPQRFDGIDRNDRYANRNIVFFDINMRGLDGIQGPVYVGTGCVFNRQALYGYDPPVSEKRPKMTCDCWPSWCCCCCGGSRKYKSKKKVESRGLLGVLHSKKKKMMGKNYVRKGSSGPVFDLEEIEEGLEGYDELEKSSLMSQKNFEKRFGQSPVFIASTLMEDGGLPEGTNSSGSLIKEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCRGWKSVYCMPKRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPLWYGYGGKLKWLERLAYINTIVYPFTSIPLLAYCTIPAVCLLTGKFIVPTLNNFASIWFMALFLSIITTSILELRWSNVSIEDLWRNEQFWVIGGVSAHLFAVFQGLLKVLAGVDTNFTVTAKAADDTEFGDLYIFKWTTLLIPPTTLIILNMVGVVAGVSDAINNGYGSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVLWSVLLASIFSLIWVRIDPFLPKQTGPVLKQCGVEC 1034
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 4711339 4715849 + Conep18aG0082600.1 Cone18ag0800 457761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone18ag0800 1034 Pfam Zinc-binding RING-finger 13 83 IPR027934 -
Cone18ag0800 1034 CDD mRING-HC-C4C4_CesA 15 66 - -
Cone18ag0800 1034 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 198 1003 - GO:0005802(PANTHER)|GO:0005886(PANTHER)|GO:0009833(PANTHER)|GO:0016759(PANTHER)|GO:0030244(PANTHER)
Cone18ag0800 1034 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 92 IPR013083 -
Cone18ag0800 1034 MobiDBLite consensus disorder prediction 111 135 - -
Cone18ag0800 1034 SUPERFAMILY RING/U-box 12 84 - -
Cone18ag0800 1034 SUPERFAMILY Nucleotide-diphospho-sugar transferases 302 857 IPR029044 -
Cone18ag0800 1034 Coils Coil 387 407 - -
Cone18ag0800 1034 Pfam Cellulose synthase 289 1027 IPR005150 GO:0016020(InterPro)|GO:0016760(InterPro)|GO:0030244(InterPro)
Cone18ag0800 1034 FunFam Cellulose synthase 406 580 - -
Cone18ag0800 1034 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 395 581 IPR029044 -
Cone18ag0800 1034 MobiDBLite consensus disorder prediction 108 148 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0803 Cone-Chr11:6511721 Cone18ag0800 Cone-Chr18:4711339 0 dispersed
Cone18ag0800 Cone-Chr18:4711339 Cone4ag1486 Cone-Chr4:11633123 0 dispersed
Cone6ag0945 Cone-Chr6:4926527 Cone18ag0800 Cone-Chr18:4711339 0 transposed
Cone11ag0802 Cone-Chr11:6510662 Cone18ag0800 Cone-Chr18:4711339 2.49E-126 wgd
Cone17ag0346 Cone-Chr17:1624001 Cone18ag0800 Cone-Chr18:4711339 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone18ag0800 K10999 - vvi:100241197 1782.69