Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone18ag0813 ATGCTGACTACGGGAGGATGGGAGAGCGTTCACGCCACATTCTATGGCGGAGGTGATGCATCTGGCACAATGGGAGGTGCTTGTGTATATGGAAACTTGTACAGCCAAGGGTACAAGACTAACACGGCAGCATTGAGCACTGCTCTTTTCAACAACGGCTTGAGTTGTGGGGCCTGCTATGAGATCACTTGCAGCTCGGACCCCATATGGTGCCTTTCTGGGACCATAACTGTAACGACAACAAACTTTTGCCCTCCAAATGCCTTGCCTAATAACAATGGTGGTTGGTGCAATCCTCCTCTCCAGCACTTTGACTTGACCGAGCCTGCTTTTCTCCAAATCGCTCAATACCGGGCCGGAATCGTCCCCATCTCATTTAGAAGGGTTTCATGTGTGAAGAAAGAAGGAATAAGGTTTACCATTAACAGTCACTCCTACTTCAACCTGGTGTTGATTACGACTGTCGGAGGTGTAGGGGATGTGCACTCTGTATCGATCAAGGGATCAAAGACAGGGTGGCAGGTGATGTCAAGGAACTGGGGATAG 546 49.45 MLTTGGWESVHATFYGGGDASGTMGGACVYGNLYSQGYKTNTAALSTALFNNGLSCGACYEITCSSDPIWCLSGTITVTTTNFCPPNALPNNNGGWCNPPLQHFDLTEPAFLQIAQYRAGIVPISFRRVSCVKKEGIRFTINSHSYFNLVLITTVGGVGDVHSVSIKGSKTGWQVMSRNWG 181
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 5002561 5003968 - Conep18aG0083900.1 Cone18ag0813 457774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone18ag0813 181 FunFam Expansin 1 132 - -
Cone18ag0813 181 CDD DPBB_EXPA_N 6 131 - -
Cone18ag0813 181 SMART dpbb_1 42 126 IPR007112 -
Cone18ag0813 181 SUPERFAMILY Barwin-like endoglucanases 6 153 IPR036908 -
Cone18ag0813 181 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 25 136 IPR007112 -
Cone18ag0813 181 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 146 181 IPR007117 -
Cone18ag0813 181 Pfam Lytic transglycolase 42 125 IPR009009 -
Cone18ag0813 181 Gene3D - 1 131 IPR036908 -
Cone18ag0813 181 PRINTS Expansin signature 37 51 IPR002963 GO:0009664(InterPro)
Cone18ag0813 181 PRINTS Expansin signature 111 124 IPR002963 GO:0009664(InterPro)
Cone18ag0813 181 PRINTS Expansin signature 135 147 IPR002963 GO:0009664(InterPro)
Cone18ag0813 181 PRINTS Expansin signature 76 86 IPR002963 GO:0009664(InterPro)
Cone18ag0813 181 PRINTS Expansin signature 64 75 IPR002963 GO:0009664(InterPro)
Cone18ag0813 181 PRINTS Expansin signature 94 111 IPR002963 GO:0009664(InterPro)
Cone18ag0813 181 PRINTS Expansin signature 147 168 IPR002963 GO:0009664(InterPro)
Cone18ag0813 181 PANTHER EXPANSIN-A15 5 181 IPR002963 GO:0009664(InterPro)
Cone18ag0813 181 Gene3D - 132 181 IPR036749 -
Cone18ag0813 181 Pfam Expansin C-terminal domain 137 181 IPR007117 -
Cone18ag0813 181 PRINTS Expansin/Lol pI family signature 46 64 IPR007118 GO:0005576(InterPro)
Cone18ag0813 181 PRINTS Expansin/Lol pI family signature 24 42 IPR007118 GO:0005576(InterPro)
Cone18ag0813 181 PRINTS Expansin/Lol pI family signature 6 21 IPR007118 GO:0005576(InterPro)
Cone18ag0813 181 PRINTS Expansin/Lol pI family signature 119 135 IPR007118 GO:0005576(InterPro)
Cone18ag0813 181 PRINTS Expansin/Lol pI family signature 173 181 IPR007118 GO:0005576(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone18ag0813 Cone-Chr18:5002561 Cone1ag0781 Cone-Chr1:53837989 2.81E-109 dispersed
Cone1ag1621 Cone-Chr1:57641927 Cone18ag0813 Cone-Chr18:5002561 2.46E-114 wgd
Cone18ag0813 Cone-Chr18:5002561 Cone5ag0142 Cone-Chr5:611803 2.93E-115 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone18ag0813 - - - 0.0