Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone18ag0828 ATGAATATAGACATGAAGATCAAGCTGATCAAAACCCATCAATTCTTCCTCTTCATCTCCCTCCTGTTCTTCTACTGTTACACTGACTCTTTTTCTTTCTGTTCAGCTTCTACGATTAACAATGAAGCATTGTCTCTCCTTTCGATTAAATCAAATCTCAATGACCCATTAGATAAGCTCAAGGATTGGAAATTAACAGACAATGCAGCTACTGCCCATAACCAGCACTGTGATTGGCCAGGGATTCAGTGCAATTCACAAGGAGAAGTACAGAAGCTTGATCTATCTCACATGAATCTAAGTGGCATTATCTCCACTGATTTTCAAAACCTTAAGAGTCTTACTTCACTCAACTTATGCTGCAATATATTCTCTTCTTCCTTGCCAAATTCAATCTCCAATCTCACCTCTCTTGAAAGCCTTGATGTCAGTCAAAACTTCTTTGTGGGTACCTTTCCGCTAGGCTTTGGAAAGGTGGTTGGCTTAACAACCTTAAATGCCTCGAGCAACAACTTCTTGGGGTTTCTTCCGGAAGATATCGGAAATGCTTCTAAACTGGAAAGTTTGGATCTCAGGGGAAGTTTTTTCGGAGGGTCAATTCCTGGTTCTTTTAAGAATCTACAGAAGTTGAAGTTTCTTGGCCTTTCTGGGAACAATTTGACTGGTCAAATCCCGGTTGTGCTTGGTCAACTTTCATCATTGGAGAGTATAATCCTTGGATACAATTACTTTGAAGGTGGAATTCCGGTCGAATTAGGAAATTTGACGAATTTGAAGTATCTTGACTTGGCAGTTGGGAATCTTGGTGGAGAGATTCCAGCTGAATTGGGAAGGCTTAGAATTCTCGAGACGGTTTTCTTGTACAAGAACAACTTTGAAGGAAGAATTCCACCAGAAATTGGTAACATTACTTCATTAATATTGCTTGATTTATCTGATAACATGTTGACAGGGAAAATCCCAGAGGAGATAACTGAGCTGAAGAAATTACAGCTTTTGAATTTAATGTGCAATCAGTTCACTGGACCGGTACCTTTGGGCCTTGGAGGATTGGCCCAGTTACAAGTTCTTGAGCTCTGGAACAATTCTTTGTCCGGCCCATTACCGAGTGATCTCGGAAAGAACTTGGAATTGGTTTGGTTGGATGTTTCATCAAATTCATTATCTGGTGAGATTCCTTCATCATTATGCAAGGGAGGGAATCTCACTAAGCTCATCCTTTTCAACAATGCCTTCTCCGGTTCAATCCCGGTCAATCTATCTACATGTCAATCCCTTGTCCGGGTTCGGATTCAGAACAATCTGCTTTCTGGAACAATTCCGGTTGGACTTGGGAAGCTTGGGAAGCTTCAAAGGCTAGAATTGGCAAATAACAGTCTAAGTGGTGGAATCCCAGATGATATTTCGCTTTCCAGGTCGCTTTCTTTCATTGATCTTTCTCAAAACAACCTCAGTTCTTCCCTTCCTTCAAATATCCTCTCTACTCCAAATCTTCAAGTTCTCATTGTCTCAAAGAACGGCTTAGAAGGTGAAATTCCGGACCAGTTCCAAGATTCTCCTTCACTTTCTGTTCTTGATCTCTCATCCAACTGTTTCTCCGGAATCATTCCAACAAGCATTTCATCATGTGAGAAATTAGTAAATATTAATCTTAAAAACAACCGAATTTCGGGTCCAATCCCAAAATCAATAGCCAATATGCCCTCACTGTCAATTCTAGATCTATCCAACAACTCTCTAACTGGAAGAATTCCGGAAAATTTCGGTATCTCCCCTGCCTTAGAATCACTCAACATTTCATTCAACCGCCTTTCAGGTCCGGTCCCATCAAATGGAATCCTAAGAACAATAAACCCAAATGATCTTGCGGGCAATGAAGGGCTCTGTGGAGGTGTTCTCCCACCATGCTCACCGAATTCCACCACTTTAACACATCAGTTGCACACAAAGCACACTGTCTTGGAATGGATAATTGGGATTGCTATGGTTTTAGCAATCGGAATAGCACTTTTCGGGGCCCGATCATTATACAAAAGATGGTATTCAAACGGTGGTTGCTTTGAAGAGAGGTATGAAACGGGTAGTGGAGAATGGCCTTGGAGGTTAATGGCCTTTCAAAGGCTTAAATTTACAAGCAATGACATCTTAGCTTGCATCAAAGAATCCAACGTAATTGGGATGGGAGCAACTGGAGTTGTCTATAAAGCTGAGATGCCACAGCTAAACACAGTTGTTGCAGTTAAAAAGCTGTGGAGATCAGCTGGAGCTGACATTGAAAGCAATGGAAATGGCAACGATCTAGTTGGAGAAGTGAATCTCTTGGGAAAGTTAAGGCACCGAAATATTGTTCGTTTATTGGGATTCATCCATAATGATGTGAATGTGATGATTGTATATGAGTTCATGCAAAACGGTAGCCTTGGAGAAGCCTTGCACGGCAAGCAAGCCAAAGGGAGGTTGCTTGTGGATTGGGTTTCAAGGTACAATATAGCACTTGGAGTTGCACAAGGTCTTGCTTATCTCCACCATGATTGTCGTCCACGAATCATCCATCGTGACATCAAATCGAACAATATTTTGCTCGATTCTAATCTTGAAGCAAGAATCGCTGATTTTGGATTAGCTAGGATGATGGTTCGGAAAAATGAGACAGTTACAGTGGTAGCTGGATCTTACGGCTATATTGCCCCCGAATATGGATACACTTTAAAGGTTGATGAGAAGATTGACATATATAGTTATGGGGTAGTTTTGTTGGAGTTACTGACCGGGAAGAGGCCGTTAGATCTGGAATTTGGAGAGAGCGTGGACATTGTAGAGTGGATTAGGAGGATGAGAGACAAGCAAAGTCTAGAAGAAACATTAGATTCAAATGTGGGGAATTGCAAGCATGTTAAAGAAGAGATGTTGGTGGTGCTTAGAATAGCACTTCTTTGTACTGCAAAGCTTCCAAAAGAAAGACCTTCCATGAGAGACATTATAACAATGCTTGGAGAGGCAAAGCCTCGAAGAAAAAGTAGTAGCAACAATAACAATGGTGGGTTTGAAAGTAACAAAGACGAGCCTGTTTTTAGTACATCACCTGTAAATGGCCTTGTAGGTTGA 3105 41.26 MNIDMKIKLIKTHQFFLFISLLFFYCYTDSFSFCSASTINNEALSLLSIKSNLNDPLDKLKDWKLTDNAATAHNQHCDWPGIQCNSQGEVQKLDLSHMNLSGIISTDFQNLKSLTSLNLCCNIFSSSLPNSISNLTSLESLDVSQNFFVGTFPLGFGKVVGLTTLNASSNNFLGFLPEDIGNASKLESLDLRGSFFGGSIPGSFKNLQKLKFLGLSGNNLTGQIPVVLGQLSSLESIILGYNYFEGGIPVELGNLTNLKYLDLAVGNLGGEIPAELGRLRILETVFLYKNNFEGRIPPEIGNITSLILLDLSDNMLTGKIPEEITELKKLQLLNLMCNQFTGPVPLGLGGLAQLQVLELWNNSLSGPLPSDLGKNLELVWLDVSSNSLSGEIPSSLCKGGNLTKLILFNNAFSGSIPVNLSTCQSLVRVRIQNNLLSGTIPVGLGKLGKLQRLELANNSLSGGIPDDISLSRSLSFIDLSQNNLSSSLPSNILSTPNLQVLIVSKNGLEGEIPDQFQDSPSLSVLDLSSNCFSGIIPTSISSCEKLVNINLKNNRISGPIPKSIANMPSLSILDLSNNSLTGRIPENFGISPALESLNISFNRLSGPVPSNGILRTINPNDLAGNEGLCGGVLPPCSPNSTTLTHQLHTKHTVLEWIIGIAMVLAIGIALFGARSLYKRWYSNGGCFEERYETGSGEWPWRLMAFQRLKFTSNDILACIKESNVIGMGATGVVYKAEMPQLNTVVAVKKLWRSAGADIESNGNGNDLVGEVNLLGKLRHRNIVRLLGFIHNDVNVMIVYEFMQNGSLGEALHGKQAKGRLLVDWVSRYNIALGVAQGLAYLHHDCRPRIIHRDIKSNNILLDSNLEARIADFGLARMMVRKNETVTVVAGSYGYIAPEYGYTLKVDEKIDIYSYGVVLLELLTGKRPLDLEFGESVDIVEWIRRMRDKQSLEETLDSNVGNCKHVKEEMLVVLRIALLCTAKLPKERPSMRDIITMLGEAKPRRKSSSNNNNGGFESNKDEPVFSTSPVNGLVG 1034
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 5537819 5541245 - Conep18aG0085400.1 Cone18ag0828 457789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone18ag0828 1034 Pfam Protein kinase domain 721 994 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone18ag0828 1034 Gene3D Ribonuclease Inhibitor 39 198 IPR032675 -
Cone18ag0828 1034 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 195 295 - -
Cone18ag0828 1034 Gene3D Ribonuclease Inhibitor 265 347 IPR032675 -
Cone18ag0828 1034 Gene3D Ribonuclease Inhibitor 199 264 IPR032675 -
Cone18ag0828 1034 Gene3D Transferase(Phosphotransferase) domain 1 806 1023 - -
Cone18ag0828 1034 Gene3D Phosphorylase Kinase; domain 1 719 805 - -
Cone18ag0828 1034 Pfam Leucine rich repeat N-terminal domain 40 85 IPR013210 -
Cone18ag0828 1034 FunFam MDIS1-interacting receptor like kinase 1 719 805 - -
Cone18ag0828 1034 FunFam Leucine-rich repeat receptor protein kinase EMS1 296 378 - -
Cone18ag0828 1034 ProSitePatterns Serine/Threonine protein kinases active-site signature. 849 861 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone18ag0828 1034 SMART LRR_typ_2 472 495 IPR003591 -
Cone18ag0828 1034 SMART LRR_typ_2 351 375 IPR003591 -
Cone18ag0828 1034 SMART LRR_typ_2 255 279 IPR003591 -
Cone18ag0828 1034 SMART LRR_typ_2 567 591 IPR003591 -
Cone18ag0828 1034 SMART LRR_typ_2 303 327 IPR003591 -
Cone18ag0828 1034 SMART LRR_typ_2 207 231 IPR003591 -
Cone18ag0828 1034 SMART LRR_typ_2 111 135 IPR003591 -
Cone18ag0828 1034 SMART LRR_typ_2 447 471 IPR003591 -
Cone18ag0828 1034 MobiDBLite consensus disorder prediction 1002 1034 - -
Cone18ag0828 1034 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 379 640 - -
Cone18ag0828 1034 SUPERFAMILY Protein kinase-like (PK-like) 716 997 IPR011009 -
Cone18ag0828 1034 PANTHER OS04G0122200 PROTEIN 389 996 IPR051809 -
Cone18ag0828 1034 ProSiteProfiles Protein kinase domain profile. 719 1004 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone18ag0828 1034 SUPERFAMILY RNI-like 269 610 - -
Cone18ag0828 1034 Pfam Leucine Rich Repeat 449 469 IPR001611 GO:0005515(InterPro)
Cone18ag0828 1034 Pfam Leucine Rich Repeat 209 231 IPR001611 GO:0005515(InterPro)
Cone18ag0828 1034 Pfam Leucine Rich Repeat 185 207 IPR001611 GO:0005515(InterPro)
Cone18ag0828 1034 Pfam Leucine Rich Repeat 353 374 IPR001611 GO:0005515(InterPro)
Cone18ag0828 1034 Pfam Leucine Rich Repeat 569 589 IPR001611 GO:0005515(InterPro)
Cone18ag0828 1034 Pfam Leucine Rich Repeat 162 182 IPR001611 GO:0005515(InterPro)
Cone18ag0828 1034 Pfam Leucine Rich Repeat 378 398 IPR001611 GO:0005515(InterPro)
Cone18ag0828 1034 Pfam Leucine Rich Repeat 305 327 IPR001611 GO:0005515(InterPro)
Cone18ag0828 1034 ProSitePatterns Protein kinases ATP-binding region signature. 725 749 IPR017441 GO:0005524(InterPro)
Cone18ag0828 1034 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 39 194 - -
Cone18ag0828 1034 PRINTS Leucine-rich repeat signature 474 487 - -
Cone18ag0828 1034 PRINTS Leucine-rich repeat signature 567 580 - -
Cone18ag0828 1034 Gene3D Ribonuclease Inhibitor 352 640 IPR032675 -
Cone18ag0828 1034 SUPERFAMILY L domain-like 75 345 - -
Cone18ag0828 1034 SMART serkin_6 719 997 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone18ag0828 1034 FunFam MDIS1-interacting receptor like kinase 1 806 1014 - -
Cone18ag0828 1034 Pfam Leucine rich repeat 90 146 IPR001611 GO:0005515(InterPro)
Cone18ag0828 1034 Pfam Leucine rich repeat 496 556 IPR001611 GO:0005515(InterPro)
Cone18ag0828 1034 MobiDBLite consensus disorder prediction 997 1034 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone18ag0828 Cone-Chr18:5537819 Cone1ag1071 Cone-Chr1:55317892 1.64E-111 dispersed
Cone4ag1245 Cone-Chr4:10320135 Cone18ag0828 Cone-Chr18:5537819 6.55E-28 dispersed
Cone7ag0892 Cone-Chr7:6956548 Cone18ag0828 Cone-Chr18:5537819 1.07E-24 dispersed
Cone18ag0828 Cone-Chr18:5537819 Cone1ag0874 Cone-Chr1:54387053 2.96E-183 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82328 PF00687 Ribosomal_L1 1.20E-30 No_clan Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone18ag0828 - - - 0.0