Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone18ag0844 ATGAAGAGAATGATAGCCCTTGGATTTGAGGGTTCAGCCAATAAGATCGGAGTTGGGATTGTCACTTTAGATGGCAGCATATTGTCAAACCCACGTCACACTTACATCACTCCTCCTGGCCATGGATTCCTTCCTCGCGAAACTGCACAACACCATCTTCAGCACATTCTCCCTCTCATAAAATCTGCATTGGACACCGCCCAAATTACCGCAGAGGAAATCCACTGTCTCTGTTACACCAAGGGTCCAGGGATGGGGGCTCCACTACAAGTCTCTGCCATTGTTGTTCGGGTTCTTTCACAGCTATGGCAGAAACCCATTGTTGCCGTGAATCACTGTGTTGCACACATTGAGATGGGAAGGATTGTAACAGGGGCAGATGATCCTGTAGTGTTGTATGTAAGTGGTGGGAATACACAGGTGATTGCTTACAGTGAAGGGAGATATAGAATTTTTGGTGAGACTATTGATATTGCTGTTGGAAACTGCTTGGATCGGTTTGCTAGGGTTCTGACACTGTCCAATGATCCAAGCCCTGGGTATAACATTGAGCAGCTTGCCAAGAAGGGAGAAAAATTCATAGACCTTCCTTACGTCGTGAAGGGGATGGATGTATCTTTTAGCGGAATATTAAGCTACATTGAAACAACTGCTGAAGAAAAGCTCAAGAATAACGAATGCACCCCAGCTGACTTGTGCTACTCCCTCCAGGAAACTGTTTTTGCTATGCTTGTGGAGATAACGGAACGGGCCATGGCCCACTGCGACAAGAAAGATGTACTCATAGTTGGGGGCGTGGGTTGTAATGAGAGATTACAAGAGATGATGAGAATAATGTGTGGGGAGAGAGGCGGGAATTTGTTTGCAACCGATGATAGATATTGCATTGACAATGGAGCCATGATAGCTTATACGGGCCTTCTTGCCTATGCCAATGGGATTTCAACTCCCCTTGAGGAAGCATCTTTTACCCAGCGCTTCCGGACGGATGAAGTGCATGCAGTTTGGAGAGAGAAGAAATGA 1023 46.24 MKRMIALGFEGSANKIGVGIVTLDGSILSNPRHTYITPPGHGFLPRETAQHHLQHILPLIKSALDTAQITAEEIHCLCYTKGPGMGAPLQVSAIVVRVLSQLWQKPIVAVNHCVAHIEMGRIVTGADDPVVLYVSGGNTQVIAYSEGRYRIFGETIDIAVGNCLDRFARVLTLSNDPSPGYNIEQLAKKGEKFIDLPYVVKGMDVSFSGILSYIETTAEEKLKNNECTPADLCYSLQETVFAMLVEITERAMAHCDKKDVLIVGGVGCNERLQEMMRIMCGERGGNLFATDDRYCIDNGAMIAYTGLLAYANGISTPLEEASFTQRFRTDEVHAVWREKK 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 5764174 5768474 - Conep18aG0087000.1 Cone18ag0844 457805

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone18ag0844 340 Gene3D - 128 290 - -
Cone18ag0844 340 SUPERFAMILY Actin-like ATPase domain 4 304 IPR043129 -
Cone18ag0844 340 Gene3D - 7 310 - -
Cone18ag0844 340 Pfam tRNA N6-adenosine threonylcarbamoyltransferase 32 304 IPR000905 -
Cone18ag0844 340 PRINTS O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 7 20 IPR017861 -
Cone18ag0844 340 PRINTS O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 260 269 IPR017861 -
Cone18ag0844 340 PRINTS O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 152 173 IPR017861 -
Cone18ag0844 340 PRINTS O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 77 97 IPR017861 -
Cone18ag0844 340 PRINTS O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 98 117 IPR017861 -
Cone18ag0844 340 PRINTS O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 130 142 IPR017861 -
Cone18ag0844 340 PANTHER TRNA N6-ADENOSINE THREONYLCARBAMOYLTRANSFERASE 5 336 IPR000905 GO:0000408(PANTHER)|GO:0005737(PANTHER)
Cone18ag0844 340 NCBIfam KEOPS complex N(6)-L-threonylcarbamoyladenine synthase Kae1 7 336 - -
Cone18ag0844 340 FunFam Probable tRNA N6-adenosine threonylcarbamoyltransferase 128 290 - -
Cone18ag0844 340 FunFam Probable tRNA N6-adenosine threonylcarbamoyltransferase 7 127 - -
Cone18ag0844 340 FunFam Probable tRNA N6-adenosine threonylcarbamoyltransferase 291 310 - -
Cone18ag0844 340 Hamap tRNA N6-adenosine threonylcarbamoyltransferase [kae1]. 4 337 IPR034680 GO:0000408(InterPro)|GO:0002949(InterPro)
Cone18ag0844 340 NCBIfam tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD 7 303 IPR017861 -
Cone18ag0844 340 CDD NBD_sugar-kinase_HSP70_actin 7 175 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone18ag0844 K01409 - - rcu:8261707 644.039
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0664 Cone-Chr11:4431038 Cone18ag0844 Cone-Chr18:5764174 9.36E-250 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1229 Blo01g00198 . . Bda08g00155 . . . Bma05g01168 . . . . . . . . . . . . . . . . . . . . . . . . . Cone18ag0844 Cone11ag0664 . . . . . . . . Bpe05g00977 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007916 1 3 1 1 1 1 1 1 1 1 0 1 1 3 1 1 1 2 0 1 1 1 1 1 1 1 1 3 1 1 35