Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone18ag0848 ATGAAGATCCAGTGTGATGTTTGTGAGAAAGCTCCGGCGACGGTGATTTGTTGCGCCGACGAGGCCGCGCTCTGTGCGAAATGTGACGTTGAAGTCCATGCAGCGAACAAACTTGCAAGCAAGCATCAGAGGCTTCACCTTCAATCCCTCTCTAACAAGCTCCCAAAATGTGACATATGCCAGGAAAAGGCAGCTTTCATTTTCTGTGTGGAAGACAGGGCCCTTCTCTGTCAAAACTGTGATGAATCAATTCATTCAGCTGGTAGTCTCTCTGCAAACCACCAGAGGTTCCTAGCCACTGGGATCCGAGTGGCTCTCAGCTCCGGTTGCAAAAAGGAAACTGAGAGAAGCTCCATTGAGCCACCCAATCAGAACAAGGAGCTTCCAGCTAAAATGCCATCTCAGCAGCAGTCTACTAGCATCACATCTTCATGGGCTGTTGACGATTTACTACACTTCTCTGATTTTGAATCCTCAGAGAAGAAAGGGCAACTAGAGTTCGGGGAGCTTGAATGGTTGGCAGATATGGGTATTTTCGGTGAGCCTATTTCTGAGGGATTAGCAGCTGCTGAAGTGCCTGAGCTGCCAATATCCCAGTCAACCAATATCATGTCATATAGACCCACAAAATCCAGCATGCCTTATAAGAAGCCTAGGTTTGAGCTCTTACAAGAGGATGAAGAGCATTTCACCGTTCCCGATCTCGGTTGA 711 47.82 MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLHLQSLSNKLPKCDICQEKAAFIFCVEDRALLCQNCDESIHSAGSLSANHQRFLATGIRVALSSGCKKETERSSIEPPNQNKELPAKMPSQQQSTSITSSWAVDDLLHFSDFESSEKKGQLEFGELEWLADMGIFGEPISEGLAAAEVPELPISQSTNIMSYRPTKSSMPYKKPRFELLQEDEEHFTVPDLG 236
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 5803138 5806119 - Conep18aG0087400.1 Cone18ag0848 457809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone18ag0848 236 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Cone18ag0848 236 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 235 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
Cone18ag0848 236 CDD Bbox1_BBX-like 56 98 IPR049808 -
Cone18ag0848 236 Gene3D Classic Zinc Finger 1 94 - -
Cone18ag0848 236 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270(InterPro)
Cone18ag0848 236 MobiDBLite consensus disorder prediction 121 139 - -
Cone18ag0848 236 CDD Bbox1_BBX-like 5 47 IPR049808 -
Cone18ag0848 236 MobiDBLite consensus disorder prediction 112 139 - -
Cone18ag0848 236 SMART bboxneu5 52 99 IPR000315 GO:0008270(InterPro)
Cone18ag0848 236 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
Cone18ag0848 236 Pfam B-box zinc finger 53 95 IPR000315 GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag1023 Cone-Chr14:8542344 Cone18ag0848 Cone-Chr18:5803138 1.49E-44 dispersed
Cone18ag0848 Cone-Chr18:5803138 Cone20ag0105 Cone-Chr20:463874 8.15E-36 dispersed
Cone18ag0848 Cone-Chr18:5803138 Cone17ag1378 Cone-Chr17:9569772 3.15E-36 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45193 PF00481 PP2C 3.70E-37 CL0238 Cone TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone18ag0848 - - - 0.0