Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone18ag0852 ATGGACAAGGACAAGTCGCAAGGTCAGGGTGGAGGTTTTCCTCCTCCGTCAGGTCGTTACTCAGGCTTTTCACCTCCTGGCAATAATTTCAATTCAAAACCTGAGCAATCCTCATCTTCGATGTTATTTGCTTCGATGGCTTCTGGTGGGAGTGCAGAAATGGGTCAATTTAATCATGGAATGTCTGATTCTAATCACTTCAGTCACGATATTAGTCGAATGCCTGACAATCCACCAAGAAGTAGGGGGCACAGACGGGCCCACTCCGAAATCCTTACTCTTCCTGATGATATCAGTTTTGATAGTGATCTTGGAGTCGTAGGTGGGGCTGATGGGCCATCATTTTCTGATGATACTGAGGAAGATTTGTTGTCCATGTATCTTGATATGGATAAGTTCAATGCATCATCTGCAACGTCTGCATTTCAAGTGGGGGAGCCATCGTCAGCTGTAGCCGGAGGAACATCTGCTCCCACACCTGGATCAGCTACTTCTAATGAAAATCTTGCCATTGGGTCTAATGGGAGGCCTAGAATTAGGCACCAACATAGCCAGTCCATGGATGGGTCCACAACAATCAAACCAGAGATGCTTGTCTCAGGATCTGATGATATCTCTGCAGCTGATACCAAGAAAGCCATGTCAGCTGCAAAGCTTGCTGAGCTAGCACTGATTGATCCCAAACGTGCGAAGAGGATCTGGGCAAATAGGCAATCAGCTGCTAGATCAAAGGAAAGAAAGATGCGGTACATTTCTGAACTTGAACGGAAAGTGCAGACTTTGCAAACAGAAGCAACTTCTTTGTCTGCTCAGCTAACCCTCTTGCAGAGAGATACAAATGGTCTCACTGTTGAGAACAGTGAACTGAAATTGCGGTTACAATCAATGGAGCAACAGGTTCACCTGCAAGATGCTTTGAATGATGCATTGAAAGAGGAAATTCAGCATCTGAAAGTATTGACAGGTCAGACAATGCCAAATGGTGGGCCCCTCATGAACTTTGCTCCTCCCTTCGGAGCTGACCAGCAATTTTATTCCAACAACCATGCAGCTGCCATGCAAACTCTCCTGACTGCACAACAATTTCAGCAGATGCAGATTCAGTCTCAGAAGCAGCAGTTTCAGCAGCATCAATTACATCAGCAACTTCAGCAGCATCAACAACAGCAGCAGCAACAGCAACAAACTGGGGAGCCGAAAATGAGAGGGGGGCCCACATCTTCTCCGAGCCAGAACGATATTTCATCAGATATGAATTCTTCTTCCTCGAAGGACTGTTGA 1281 46.06 MDKDKSQGQGGGFPPPSGRYSGFSPPGNNFNSKPEQSSSSMLFASMASGGSAEMGQFNHGMSDSNHFSHDISRMPDNPPRSRGHRRAHSEILTLPDDISFDSDLGVVGGADGPSFSDDTEEDLLSMYLDMDKFNASSATSAFQVGEPSSAVAGGTSAPTPGSATSNENLAIGSNGRPRIRHQHSQSMDGSTTIKPEMLVSGSDDISAADTKKAMSAAKLAELALIDPKRAKRIWANRQSAARSKERKMRYISELERKVQTLQTEATSLSAQLTLLQRDTNGLTVENSELKLRLQSMEQQVHLQDALNDALKEEIQHLKVLTGQTMPNGGPLMNFAPPFGADQQFYSNNHAAAMQTLLTAQQFQQMQIQSQKQQFQQHQLHQQLQQHQQQQQQQQQTGEPKMRGGPTSSPSQNDISSDMNSSSSKDC 426
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 5842041 5846348 - Conep18aG0087800.1 Cone18ag0852 457813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone18ag0852 426 Gene3D - 227 280 - -
Cone18ag0852 426 CDD bZIP_plant_RF2 229 278 IPR044759 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone18ag0852 426 Coils Coil 376 396 - -
Cone18ag0852 426 SMART brlzneu 224 288 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone18ag0852 426 FunFam probable transcription factor PosF21 227 280 - -
Cone18ag0852 426 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 226 289 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone18ag0852 426 MobiDBLite consensus disorder prediction 22 68 - -
Cone18ag0852 426 SUPERFAMILY Leucine zipper domain 228 279 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone18ag0852 426 MobiDBLite consensus disorder prediction 147 196 - -
Cone18ag0852 426 Pfam bZIP transcription factor 228 280 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone18ag0852 426 Coils Coil 244 313 - -
Cone18ag0852 426 MobiDBLite consensus disorder prediction 1 86 - -
Cone18ag0852 426 MobiDBLite consensus disorder prediction 378 426 - -
Cone18ag0852 426 MobiDBLite consensus disorder prediction 69 86 - -
Cone18ag0852 426 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 68 401 - GO:0003700(PANTHER)|GO:0005634(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone18ag0852 Cone-Chr18:5842041 Cone5ag0141 Cone-Chr5:607378 2.45E-56 dispersed
Cone11ag0660 Cone-Chr11:4403987 Cone18ag0852 Cone-Chr18:5842041 5.34E-251 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45194 PF01027 Bax1-I 9.90E-47 CL0453 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone18ag0852 - - - 0.0