Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone18ag0862 ATGAAGAACAGCAGCAGCATCAGTTTCGGAGACGATACGAAGGAGCCTGCTAGCTCAAACCTCGATTCCAGATTCAACCAAACCCTCAGAAGTGTTCAAGGGCTACTTAAAGGCCGAAGTATTCCGGGAAAAGTATTACTGACTAGGAGATCAGATCCGCTACAAAACAGAAGCTCACAAGAAGATTCCCCAAGTTATGAGAGGAGGTTCTCAGATAATGATACTGGCACAAGTGATCACATGAACAAGTCTATGGAGAAGAATGCAATGGGTGCTCGGGCTACAGACTCTGCAAGGGTTATGAAGTTCACGAAAGTGCTCTCAGATACAACAGCCGTGTTAGAAAAGGTACGTGAGCTGGCTTGGAGTGGTGTGCCACCATACATGCGCCCTAACGTATGGAGGCTTCTTGTGGGATACGCACCACCTAATTCAGATAGAAGGGAAGGAGTTCTAAGAAGGAAACGTCTTGAGTATCTTGATTGTGTTTCTCAGTATTATGACATTCCAGATACTGAACGTTCAGACGATGAAATCAACATGCTTCGCCAGATTTCTGTTGATTGTCCAAGAACCGTACCTGACGTCGTATTCTTTCAGCAAGCACAAGTCCAAAAATCGTTGGAGCGCATCTTGTATACATGGTCCATTCGACATCCTGCAAGTGGATATGTTCAGGGAATAAACGATCTTGCTACCCCCTTTCTAGTTGTTTTCTTGTCAGAATACTTAGAGGGTGGTGTTGAGAATTGGTCAGTCTCAGACTTGTCTTCCGACAATATTTCAAATATAGAGGCTGATTGCTATTGGTGCCTATCAAAGTTACTTGATGGTATGCAAGATCATTACACATTTGCACAACCAGGAATCCAGAGACTAGTTTTTAAACTAAAGGAAGTCGTTAGACGGATTGATGAACCCGTTTCAAGACACATGGAGGAGCAAGGCCTAGAATTTCTTCAATTTGCTTTCCGTTGGTTCAACTGTCTTTTAATACGAGAGATTCCTTTCCATCTCGTTACTCGGCTTTGGGACACTTTTCTTGCTGAAGGAGATGCCTTGCCAGATTTCCTTGTGTATATATTCGCTAGTTTTCTTTTAACGTGGTCCGATAAGCTGCGGCAGCTTGATTTCCAAGACTTAGTGATGTTTCTCCAGCACCTTCCAACTCACAATTGGAGTCATCAAGAGCTTGAGGCTGTGCTTTCAAGAGCATATATGTGGTACAGTATGTTCAACAGCTCTCCTAGCCACTTAGCTAGCTAA 1266 43.6 MKNSSSISFGDDTKEPASSNLDSRFNQTLRSVQGLLKGRSIPGKVLLTRRSDPLQNRSSQEDSPSYERRFSDNDTGTSDHMNKSMEKNAMGARATDSARVMKFTKVLSDTTAVLEKVRELAWSGVPPYMRPNVWRLLVGYAPPNSDRREGVLRRKRLEYLDCVSQYYDIPDTERSDDEINMLRQISVDCPRTVPDVVFFQQAQVQKSLERILYTWSIRHPASGYVQGINDLATPFLVVFLSEYLEGGVENWSVSDLSSDNISNIEADCYWCLSKLLDGMQDHYTFAQPGIQRLVFKLKEVVRRIDEPVSRHMEEQGLEFLQFAFRWFNCLLIREIPFHLVTRLWDTFLAEGDALPDFLVYIFASFLLTWSDKLRQLDFQDLVMFLQHLPTHNWSHQELEAVLSRAYMWYSMFNSSPSHLAS 421
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 5937977 5948390 + Conep18aG0088800.1 Cone18ag0862 457823

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone18ag0862 421 Gene3D - 286 421 - -
Cone18ag0862 421 MobiDBLite consensus disorder prediction 43 94 - -
Cone18ag0862 421 FunFam TBC1 domain family member 98 150 - -
Cone18ag0862 421 MobiDBLite consensus disorder prediction 62 81 - -
Cone18ag0862 421 FunFam TBC domain containing protein 286 421 - -
Cone18ag0862 421 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 103 311 IPR035969 -
Cone18ag0862 421 Gene3D - 78 139 - -
Cone18ag0862 421 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 160 285 - -
Cone18ag0862 421 Pfam Rab-GTPase-TBC domain 129 368 IPR000195 -
Cone18ag0862 421 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 287 409 IPR035969 -
Cone18ag0862 421 FunFam TBC domain containing protein 154 285 - -
Cone18ag0862 421 ProSiteProfiles TBC/rab GAP domain profile. 124 351 IPR000195 -
Cone18ag0862 421 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 84 387 - GO:0005096(PANTHER)|GO:0090630(PANTHER)
Cone18ag0862 421 SMART tbc_4 121 377 IPR000195 -
Cone18ag0862 421 MobiDBLite consensus disorder prediction 1 25 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone18ag0862 K20360 - - rcu:8263160 710.679
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone18ag0862 Cone-Chr18:5937977 Cone7ag0400 Cone-Chr7:1779265 4.19E-25 dispersed
Cone11ag0647 Cone-Chr11:4297679 Cone18ag0862 Cone-Chr18:5937977 2.53E-286 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1285 . . . . . . . . . . . Cma14g01425 . Car14g01255 . . Cpe03g01198 . . . . . . . . . . . . . . Cone14ag0625 Cone15ag0635 Cone18ag0862 Cone11ag0647 . . . Cme07g01957 . . . . . . . . . . Cmo14g01461 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005593 0 1 0 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 1 1 3 5 1 39