Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone18ag0863 ATGAAATCTGCTCCGATGGGTTCTCTAAAAATCCAATTTTCACAAGTGGGGTCCTATCAAAATGGTCCAAAACCTTTCCTGGACTACGATCATCATCATATGGAACGAGCAAATATTATAACGTGTGGGCTAAGGAAAGGTGCGAGGGAGCAGCGCTTGTGGAGGAGGTCAAGGGTGCTTTCAACTGAAGCTATTCAAGCAGTCCAATCGCTCAAGTTGGCTAAATCAAGCCCTAAATTAGAGGAGGTCTTTAATAGAAGACTCAACAGGCTCTTGAAAGCAGACATGTTGGATGCACTCACTGAGTTGCAGAGACAGAGTGAACTCGAGTTAGCCCTTAAGGTCTTCAAATATTTACGTAATGAAGCATGGTACAAACCAGATCTATCTCTATATTGCGACATGATTCTATTGGCGGGGAAGAAAAAACTAATCAGAATGGCCGAAGAGCTTTTTTCAGAACTAAAAAAAGAAGGTTTAAATCCTGATACTAGGGCTTTTACTGAGATGATTGGAGCTTATATAAATGTGGATATGATGGAAAGAGCAATGGAGATGTATGAATTGATGAAGGCATCGGGTTGTAGTCCAGATAGGCTAACATTCACAATTTTGATTCGTAACCTGGAAAAGTGTGGAGAAAAAGAGCTTGCTGCTGTGGTTAAGAGAGAATGTGCTGATTTTATGGATGCTCCTGAGAAATTCCTTGAAGAAGTTGACCATAAACATGTAAAAGGAAGACCACTCAATCTTGTTTAA 759 40.45 MKSAPMGSLKIQFSQVGSYQNGPKPFLDYDHHHMERANIITCGLRKGAREQRLWRRSRVLSTEAIQAVQSLKLAKSSPKLEEVFNRRLNRLLKADMLDALTELQRQSELELALKVFKYLRNEAWYKPDLSLYCDMILLAGKKKLIRMAEELFSELKKEGLNPDTRAFTEMIGAYINVDMMERAMEMYELMKASGCSPDRLTFTILIRNLEKCGEKELAAVVKRECADFMDAPEKFLEEVDHKHVKGRPLNLV 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 5949001 5951938 - Conep18aG0088900.1 Cone18ag0863 457824

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone18ag0863 252 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 32 245 IPR044190 GO:0000373(InterPro)|GO:0003723(InterPro)|GO:0009658(InterPro)
Cone18ag0863 252 Pfam PPR repeat 132 160 IPR002885 -
Cone18ag0863 252 Pfam PPR repeat family 162 209 IPR002885 -
Cone18ag0863 252 NCBIfam pentatricopeptide repeat 167 198 IPR002885 -
Cone18ag0863 252 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 128 162 IPR002885 -
Cone18ag0863 252 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 163 197 IPR002885 -
Cone18ag0863 252 Coils Coil 138 158 - -
Cone18ag0863 252 Gene3D Tetratricopeptide repeat domain 59 229 IPR011990 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone18ag0863 K01183 - - mdm:103432800 301.982
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0702 Cone-Chr16:8269742 Cone18ag0863 Cone-Chr18:5949001 6.67E-20 dispersed
Cone18ag0863 Cone-Chr18:5949001 Cone1ag0607 Cone-Chr1:5942389 2.13E-19 dispersed
Cone18ag0863 Cone-Chr18:5949001 Cone8ag1344 Cone-Chr8:10799859 8.73E-24 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1286 . . . . . . . . . . . Cma14g01426 . Car14g01256 . . . . . . . . . . . . . . . . . . . Cone18ag0863 . . . . Cme07g01955 . . . . . . . . . . Cmo14g01462 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012863 1 2 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 0 1 1 1 1 1 1 1 28