Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone18ag0867 ATGGAGTTAGACCCTGACGATGTCTTCAGAGATGATGAAGACGACGACCCTGATAATCAAGTTTACCTGGGAAGAGAATCGAGCAAAGAACTGGTCGTTTTCATGGTTGATGCTTCACCCAAAATGTTCGCTACAACTTGCCCCTCCGGAGATGAAAAGGAGGAGACACATTTCCATATTGCTGTGAGTTGCATCTCGCAGTCATTGAAGACCCAAATCATAAATAGGTCCTATGATGAAGTTGCTATATGCTTTTTTAACACGAGAGAGAAGAAGAACTTGCAGGATCTAAATGGTGCTTATGTGTACAATGTTGCTGAAAGGGAGGATCTTGACCGGCCCACAGTGAGGCTAATAAAAGCATTTGATTGCATAGAGGAGGTATTTAAGAAAGAAATTGGAAGCCAATATGGCATTGTGTCTGGGTCTCGAGAAAATTCCCTTTACAATGCCCTTTGGGTAGCACAAGCACTGCTTCGTAAAGGATCTGCAAAGACAGCTGATAAACGGATGCTCTTGTTTACAAATGAAGATGATCCTTTTGGGAATATCAAGGGAGCAACAAAATTTGATATGACAAGAACCACAGTACAGCGAGCTAAGGACGCTCAAGATCTTGGCATATCCATTGAACTTCTCCCTTTGAGTCAGCCCGAGGAGCAGTTTAATGTGTCTCTCTTCTATGCTGATTTGATTGCAGTAGAAGGTGATGAGCTTACTCAATTGGTACCTGCAGCAGGAGAGAAATTGGAAGACATGAAAGATCAATTGAGGAAGCGCATGTTCAAGAAGCGCATTGTCAAAAAAATCAATTTCGTAATTGCCAATGGATTATCAATTGAGTTGAATTCATATGCATTGATTCGACCTACTGTTCCAGGAGCAATTACATGGCTGGATTCTGTAACGAATCTTCCTTTGAAGACAGAAAGAACTCTCATATGTGCGGATACTGGTGCATTGGTACAAGAAGCTCCAAAGCGCTTTCAGATTTACAAAAACGAGTCCGTCAAATTTTCAGTGGAAGAGCTATCAGAGATAAAACGAATTTCAACAGGACAGCTTTGTCTTCTTGGTTTCAAGCCATTAAGTTGCTTAAAAGATTATCACAATATGAGGCCATCAACATTTCTATTCCCATCTGATGAGGAAGTGATTGGCAGCACATGCTTGTTCATTGCTCTGCATAGATCCATGCAACGACTTAAGCGCTTCGCAGTTGCATTTTATGGAAGCTCTTCTCATCCTCAGTTGGTTGCTCTTGTTTCCCAAGATGAGATTGTAAGCTCCGGTGGTCAGGTTGAGCCACCAGGAATGACCATGATTTATCTCCCATACGCTGATGATATTCGACATATTGAAGAGCTTCATACAGATTCAGAAGTTGCACCTCGAGCAAATGATGAACAAATAAAAAAGGCTGCTAATTTATTGAAACGTATTGACTTGAAAGACTTTTCAGTCTGCCAATTTTCTAATCCTGCCTTGCAAAGGCACTATGCAATATTGCAAGCACTCGCTCTGGATGAGGATGAGATTCCAGAAACAAAAGATGATACTGCCCCTGATGAAGAAGGCATGGCTAGACCTGGAGTTGTGAATGCATTAGAGGATTTCAAGATTTGTGTTTATGGGGAAAATTATGATGATGGAATTGCTGAAAATGAAGGGGAGGCTCGAAAGAAAAGAAAAGCAATTGCAGAAAATGCGGCTCAGAAGTATGCAGAGTATGACTGGGCTGATCTTGCTGAAAAGGGAAAGTTGAAGGATTTATCAGTGGCGGAATTGAAGTATTACTTGGCAGCTAATGACCTTCCCGTTTCTGGAAAAAAGGAGGTCTTGATGGGCCGAATTCTCTCTCATATGGGCAAGTAA 1875 41.6 MELDPDDVFRDDEDDDPDNQVYLGRESSKELVVFMVDASPKMFATTCPSGDEKEETHFHIAVSCISQSLKTQIINRSYDEVAICFFNTREKKNLQDLNGAYVYNVAEREDLDRPTVRLIKAFDCIEEVFKKEIGSQYGIVSGSRENSLYNALWVAQALLRKGSAKTADKRMLLFTNEDDPFGNIKGATKFDMTRTTVQRAKDAQDLGISIELLPLSQPEEQFNVSLFYADLIAVEGDELTQLVPAAGEKLEDMKDQLRKRMFKKRIVKKINFVIANGLSIELNSYALIRPTVPGAITWLDSVTNLPLKTERTLICADTGALVQEAPKRFQIYKNESVKFSVEELSEIKRISTGQLCLLGFKPLSCLKDYHNMRPSTFLFPSDEEVIGSTCLFIALHRSMQRLKRFAVAFYGSSSHPQLVALVSQDEIVSSGGQVEPPGMTMIYLPYADDIRHIEELHTDSEVAPRANDEQIKKAANLLKRIDLKDFSVCQFSNPALQRHYAILQALALDEDEIPETKDDTAPDEEGMARPGVVNALEDFKICVYGENYDDGIAENEGEARKKRKAIAENAAQKYAEYDWADLAEKGKLKDLSVAELKYYLAANDLPVSGKKEVLMGRILSHMGK 624
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 5981459 6009906 - Conep18aG0089300.1 Cone18ag0867 457828

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone18ag0867 624 SMART sap_9 588 622 IPR003034 -
Cone18ag0867 624 SMART ku_4 318 461 IPR006164 GO:0003677(InterPro)|GO:0006303(InterPro)
Cone18ag0867 624 Gene3D - 447 547 - -
Cone18ag0867 624 SUPERFAMILY vWA-like 28 264 IPR036465 -
Cone18ag0867 624 Gene3D von Willebrand factor, type A domain 29 261 IPR036465 -
Cone18ag0867 624 SUPERFAMILY SAP domain 576 622 IPR036361 -
Cone18ag0867 624 PANTHER KU AUTOANTIGEN DNA HELICASE 25 624 - GO:0000723(PANTHER)|GO:0003690(PANTHER)|GO:0006303(PANTHER)|GO:0042162(PANTHER)|GO:0043564(PANTHER)
Cone18ag0867 624 Pfam Ku70/Ku80 C-terminal arm 485 570 IPR005160 GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0006303(InterPro)
Cone18ag0867 624 Gene3D Ku70, bridge and pillars 290 351 IPR027388 -
Cone18ag0867 624 MobiDBLite consensus disorder prediction 1 19 - -
Cone18ag0867 624 PIRSF Ku70 2 624 IPR006165 GO:0000723(InterPro)|GO:0003677(InterPro)|GO:0003684(InterPro)|GO:0005634(InterPro)|GO:0006303(InterPro)|GO:0042162(InterPro)|GO:0043564(InterPro)
Cone18ag0867 624 FunFam ATP-dependent DNA helicase 2 subunit KU70 29 261 - -
Cone18ag0867 624 Pfam Ku70/Ku80 N-terminal alpha/beta domain 32 266 IPR005161 -
Cone18ag0867 624 Gene3D SAP domain 569 624 IPR036361 -
Cone18ag0867 624 MobiDBLite consensus disorder prediction 1 20 - -
Cone18ag0867 624 SUPERFAMILY SPOC domain-like 265 545 IPR016194 -
Cone18ag0867 624 CDD vWA_ku 29 260 - -
Cone18ag0867 624 Gene3D - 265 446 IPR016194 -
Cone18ag0867 624 ProSiteProfiles SAP motif profile. 588 622 IPR003034 -
Cone18ag0867 624 NCBIfam ATP-dependent DNA helicase II, 70 kDa subunit (ku70) 27 622 IPR006165 GO:0000723(InterPro)|GO:0003677(InterPro)|GO:0003684(InterPro)|GO:0005634(InterPro)|GO:0006303(InterPro)|GO:0042162(InterPro)|GO:0043564(InterPro)
Cone18ag0867 624 CDD KU70 265 543 IPR047087 -
Cone18ag0867 624 Pfam Ku70/Ku80 beta-barrel domain 275 472 IPR006164 GO:0003677(InterPro)|GO:0006303(InterPro)
Cone18ag0867 624 FunFam ATP-dependent DNA helicase 2 subunit KU70 447 547 - -
Cone18ag0867 624 FunFam X-ray repair cross complementing 6 325 446 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone18ag0867 K10884 - - csv:101207694 950.273
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1094 . . . . . Bpe14g01051 . . . . . . . . . . . Bhi01g02623 . . . . . Lcy11g1238 . . . . . . . . . Cone18ag0867 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010821 0 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 32