Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone18ag0872 ATGTCCGAGTCTTATGATCAATCATCCCCTGCTTTTGACAGACCCAGGTCGGTGGCGAAGAAGGTTCTCGCTAAGTCCCAACATGAAGGAGCTGGTGCTGTTGTTAGAAGAAGCATCGGAAGTAATGATTTGAAGAATTTAGACCCATTTCTTATGTTGGATCAATTCTCAGTTAGCCCTCCTGCTGGATTTCCTGACCATCCCCACAGAGGGTTTGAAACTGTAACATATATGTTACAAGGAGGAATCACCCATCAAGATTTTGCTGGGCATAAGGGTACAATCTGGACAGGGGATGTGCAGTGGATGACAGCTGGCAGAGGGATTATCCACTCTGAAATGCCTGCTGGAGAAGGAACCCAAAAAGGTCTCCAACTATGGATCAATTTGAAATCAAGAGATAAAATGATTGAGCCAACATATCAAGAGCTACTAAGTGAGAATATTCCTAAAGTGGAAAAAGACGGTGTTAAGGTTAAGGTTATAGCTGGAGCATCAATGGGAGTTGAGTCTTTAGTTTATACTCAGACTCCAACAATGTATCTTGATTTCACTATAAAACCAAGAGCTCATGTGCATCAAAGCATTCCAGAATCTTGGAACTCTTTCATCTATGTAATAGAAGGTGAGGGGGTGGTGGGGTCTACCAACTCATTGCCCGTGACGGCTCATCATATTATTGTTCTGGGGCCCGGCAACGGCGTGAGTGTGTGGAACAGATCATCTGATCCGCTCAGATTCGTGCTAATTGCAGGACAACCATTAAATGAAGAAGTAGTTCAATATGGACCTTTTGTAATGAACACACAAGCTGAGATTAACCAAGCTATTGAGGACTATCATTACTCCAAGAATGGGTTTGAAATGGCCAAGTCTTGGAGGTCTCAATAA 891 43.1 MSESYDQSSPAFDRPRSVAKKVLAKSQHEGAGAVVRRSIGSNDLKNLDPFLMLDQFSVSPPAGFPDHPHRGFETVTYMLQGGITHQDFAGHKGTIWTGDVQWMTAGRGIIHSEMPAGEGTQKGLQLWINLKSRDKMIEPTYQELLSENIPKVEKDGVKVKVIAGASMGVESLVYTQTPTMYLDFTIKPRAHVHQSIPESWNSFIYVIEGEGVVGSTNSLPVTAHHIIVLGPGNGVSVWNRSSDPLRFVLIAGQPLNEEVVQYGPFVMNTQAEINQAIEDYHYSKNGFEMAKSWRSQ 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 6073918 6075745 + Conep18aG0089800.1 Cone18ag0872 457833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone18ag0872 296 PANTHER PIRIN-RELATED 3 296 IPR012093 -
Cone18ag0872 296 Gene3D Jelly Rolls 150 255 IPR014710 -
Cone18ag0872 296 CDD cupin_pirin_C 178 254 - -
Cone18ag0872 296 Pfam Pirin C-terminal cupin domain 181 285 IPR008778 -
Cone18ag0872 296 Gene3D Jelly Rolls 29 281 IPR014710 -
Cone18ag0872 296 Pfam Pirin 35 128 IPR003829 -
Cone18ag0872 296 FunFam pirin 29 170 - -
Cone18ag0872 296 PIRSF Pirin 14 294 IPR012093 -
Cone18ag0872 296 CDD cupin_pirin_N 33 130 - -
Cone18ag0872 296 SUPERFAMILY RmlC-like cupins 17 294 IPR011051 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone18ag0872 Cone-Chr18:6073918 Cone9ag0037 Cone-Chr9:158582 6.02E-143 dispersed
Cone11ag0632 Cone-Chr11:4131211 Cone18ag0872 Cone-Chr18:6073918 1.67E-196 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone18ag0872 K06911 - csv:101205861 502.286