Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone18ag0874 ATGTACCAATCAACCTCTTCATCATCCTCCTCACAAAAATCGACGGGCCCCAACCATGGAGGCGCGGGCTGCGGCCTCACTCGCTATGTTTCAGCTCCTGGATCCCTCCTCAGCTCAGCCGTAGATTCCGTCATCGGAAGACATCGTGACTCAACCACAGGACTCAGATCACCACCGTCACTCGCTGTGCCCTACTTCTCCTCCGGCGATTCCGCCGGCGAGTCATCTTGCAAGGTTGCGCACTCTACATCCAACGATCCTAAATCCGCATCGAGAGACTTGCAGGGATCGTACGGCCCTCCCGAGTTTGGCCTGGGTGATTTCTCTAGTACGATCAATTTAAACGGCCGCTCTGGTTACGGCGGATCTTCATCTTCACCGTCTTCTTCTCTAGTGCGTCAGAAGAGCTCGCCTGCTGGTTTCTTTAGCCATCTCACTGCTGCTCCTCCTGACAGTAATGGATTTTTTGTTACAAGGGGAACTGGAAATTATAGCTCACTAGGTGGCCATGGAGTAGGAAGGTTAAAATCGCAGTTGAGTTTCACACGGCAAGATTCTCTCTCTCAAATCTCTGAAGTAAGTGAAAATGGTATCGATGGGGTCAGCTCTCACGCTGGAATTCAAAGCATGTCTCGCTCTTTTGCCCCGACTAGCTTCGGAATGGACTCTTGGGACAGTAGCAATTCTATTGTATTCTCTCCTCCGTCGAGTAAAAGAGCCAAGAATGTAGATGGAGACATATTTAACTGTCTCAATGGCTTAGAGTCTCAGCTTAGCCTGCCTCAGACAGGTCTTGAGATGGGAATGGTGGAGAAGCTATTACAAATCCCTGAAGATTATGTCTCTTGCAAAATACGAGCCAAGCGTGGCTTTGCCACTCATCCCCGCAGTATTGCTGAAAGAGAGAGGAGAACGAGAATAAGTGGGAAATTGAAGAAACTACAGGAGCTTGTTCCCAACATGGATAAGCAAACAAGCTATGCAGACATGCTGGACTTGGCAGTACAACATATAAAGGGCCTTCAAAATCAAGTTCTGAATCTTCATAACGATCTTGAAAACTGCACATGTGGATGCAAACAATCCAAAGCTTAA 1095 48.22 MYQSTSSSSSSQKSTGPNHGGAGCGLTRYVSAPGSLLSSAVDSVIGRHRDSTTGLRSPPSLAVPYFSSGDSAGESSCKVAHSTSNDPKSASRDLQGSYGPPEFGLGDFSSTINLNGRSGYGGSSSSPSSSLVRQKSSPAGFFSHLTAAPPDSNGFFVTRGTGNYSSLGGHGVGRLKSQLSFTRQDSLSQISEVSENGIDGVSSHAGIQSMSRSFAPTSFGMDSWDSSNSIVFSPPSSKRAKNVDGDIFNCLNGLESQLSLPQTGLEMGMVEKLLQIPEDYVSCKIRAKRGFATHPRSIAERERRTRISGKLKKLQELVPNMDKQTSYADMLDLAVQHIKGLQNQVLNLHNDLENCTCGCKQSKA 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 6086042 6093741 - Conep18aG0090000.1 Cone18ag0874 457835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone18ag0874 364 Gene3D - 288 351 IPR036638 GO:0046983(InterPro)
Cone18ag0874 364 MobiDBLite consensus disorder prediction 1 26 - -
Cone18ag0874 364 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 291 341 IPR011598 GO:0046983(InterPro)
Cone18ag0874 364 FunFam Transcription factor bHLH130 family 292 361 - -
Cone18ag0874 364 MobiDBLite consensus disorder prediction 74 92 - -
Cone18ag0874 364 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 294 354 IPR036638 GO:0046983(InterPro)
Cone18ag0874 364 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 101 349 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Cone18ag0874 364 SMART finulus 297 347 IPR011598 GO:0046983(InterPro)
Cone18ag0874 364 MobiDBLite consensus disorder prediction 1 18 - -
Cone18ag0874 364 MobiDBLite consensus disorder prediction 74 105 - -
Cone18ag0874 364 Pfam Helix-loop-helix DNA-binding domain 297 342 IPR011598 GO:0046983(InterPro)
Cone18ag0874 364 CDD bHLH_AtbHLH_like 296 348 IPR045239 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone18ag0874 Cone-Chr18:6086042 Cone20ag1083 Cone-Chr20:7521477 2.13E-36 dispersed
Cone11ag0630 Cone-Chr11:4108654 Cone18ag0874 Cone-Chr18:6086042 6.89E-225 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45197 PF13943 WPP 2.00E-35 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone18ag0874 - - - 0.0