Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone18ag0883 ATGCTCCTTCCTTCGCACTCTGCAGTGTGTTGGATCAGATATCTTTTCATGGCGACTACCTCTCTTCTCTCCGCCTACTCTTTCACGCATTCCTCTCACCATCGCCGTCCGAATCTTGCTCCGCCGACCACTCGAACTTCGGCCTCTGTCTCTTTTACCCTTCCTCTCCTCAGAACCACTTCCTACTCCTCCAATTATACCTCGCGGTTTAATTCCTATTCTCTGTCGTCTCTTAGGAAATTCTCGACTCGTGCTTCCCTCGGGGAAGGAGAAACCGTCGGGAATGAGCCTCTGGTAGGTGAGGATTCTGCGGCGTTTGATCTTTCCGAGCAGAAAATTTCGTCGTGGTTTTATTTTATTGTGGTTCTTGGTGTTGTTCTCTTCGTGCTGGATGTGGCTTGGATCGATAACTCTACTGGATTTGGAAAGCCCTTTATTGACTCAGTTTCTCAGCTTTCCGATAGCCCTGAGGTTGTAATGTTGATCCTTATTACCATTTTTGCCACTGTTCATAGTGGTCTGGCCAGTCTCAGGGACGTGGGTGAGAAACTCATTGGTGAACGAGCCTTTCGTGTTCTCTTTGCAGGAACTTCTTTACCTTTAGCTGTTAGCACTATCGTATATTTCATTAACCATAGATATGACGGAGTACAGTTATGGCAGCTTCAAAGTGTTCCTGGGGTCCATCAAGCAGTTTGGCTGAGTTCATTTATATCCTTCTTTCTCCTCTACCCTTCAACATTTAATCTACTGGAAGTAGCAGCTGTTGAAAAGCCTAAAATGCATCTTTGGGAATCTGGCATCATGAGGATCACTAGGCATCCACAGATGGTAGGGCAGGTGATCTGGTGTGTGGCTCACACGATCTGGATTGGGAACTCAGTAGTGGCAGCAGCTTCTCTTGGGTTGATTGGACATCATCTTTTCGGTGTCTGGAATGGAGATAGGCGATTAGCCAAGCAATATGGTGTTGAGTTTGAGGTGGTTAAAAGCCGAACAAGTATTATTCCATTTGCAGCCGTGCTAGAAGGCCGTCAAAAGTTGCCAGAAGATTACTACAAGGAGTTTCTCCGATTGCCTTATCTCACTATCACTGCATTGACAATCGGTGCTTACCTTGCTCACCCCCTTATGCAGGCTGGTAGTTTTCAGCTTCATTGGTAG 1164 46.48 MLLPSHSAVCWIRYLFMATTSLLSAYSFTHSSHHRRPNLAPPTTRTSASVSFTLPLLRTTSYSSNYTSRFNSYSLSSLRKFSTRASLGEGETVGNEPLVGEDSAAFDLSEQKISSWFYFIVVLGVVLFVLDVAWIDNSTGFGKPFIDSVSQLSDSPEVVMLILITIFATVHSGLASLRDVGEKLIGERAFRVLFAGTSLPLAVSTIVYFINHRYDGVQLWQLQSVPGVHQAVWLSSFISFFLLYPSTFNLLEVAAVEKPKMHLWESGIMRITRHPQMVGQVIWCVAHTIWIGNSVVAAASLGLIGHHLFGVWNGDRRLAKQYGVEFEVVKSRTSIIPFAAVLEGRQKLPEDYYKEFLRLPYLTITALTIGAYLAHPLMQAGSFQLHW 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 6224857 6229916 - Conep18aG0090900.1 Cone18ag0883 457844

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone18ag0883 387 PANTHER 15-CIS-ZETA-CAROTENE ISOMERASE, CHLOROPLASTIC 20 387 - GO:0009507(PANTHER)|GO:0016120(PANTHER)|GO:0090471(PANTHER)
Cone18ag0883 387 Pfam NnrU protein 160 378 IPR009915 -
Cone18ag0883 387 Gene3D - 153 338 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone18ag0883 K15744 - - gmx:100793910 509.22
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1089 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone18ag0883 . . . . . Blo02g00422 Blo07g00080 . . . Bpe13g00744 Bma02g00995 Bma06g01412 . . . . . . . . . . . . . . . . Cla07g01497 Cam07g1596 Cec07g1692 Cco07g1655 Clacu07g1586 Cmu07g1552 Cre07g1929 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011013 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31