Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone18ag0886 ATGAAGAAGCTGAAAATTCCCTTCATCCATTCCCGATTGCTTGTTTTCGCTATCTCGATCCGGAACGTGGTTCTTGGGCGGGGATATTCCATAATTAATCAATATAGTAGAAGGCCTGAGGTTTATCCATTTCAGAGGGTTCTAAAATGGCAAGCGGTCTTGGACTGGACTCTCTCGTTGATCGGTGTCTTGAAAGGGTACGACCAGGCTACCAACATTATACTCGATGAATCACATGAACGTGTTTACTCAACCAAGGAAGGCGTTCAACAACTTGTGTTGGGTTTATACATAATAAGAGGCGACAACATAAGCATTGTTGGAGAGCTAGATGAAGAGCTTGATTCTAGTCTTGACCTGTCTGAGTTGAGAGCTCATCCGCTCAAGCCTGTCTCTGTCTTATGTGAGCACGAAGGGCCCGCCCTCTGTCTCTTCTCTTCACTTCCCTTTCCTGTTGACGATCGCTATGCTCTTCTTCTGCAACACTCATCTTCGTCTTTTTCACCTCTAGATTTCTCTGTCATGGTGTTTGCTTTTGCTTCCTCGTCCTTCCCCATCGGTAACTCCGAAGGGGCTTTTGATGATGATGATGATGATGATTTTAATCTCAATTTTTCATCCTCGAGTTATATTAGTGAAAGAGCTCTTGAAGAACTCAAAGCTTGTAGACATATCAGAGAGACTAACCTTACTGCTGCAGAAATAGCTAGGACAACATTAGAGGTTTGTGATTTTGTGTGCTACATTTTAGAGGAAATCACAAGTGGATCCAGAGATGAAGAAACTTTGAGCTTTGAATCCAAAGATACTCAAAGCAACCATGGATCAACTCTCTACAAGTTGGAGATCATGAGAATAAAGCTCTTCTCCATATATGGAGCTCAGTCGGAAATTAATTTAGAAGATTTTCAAGATGCTGAACCAGATATTCCTGTACATTCCACTCCGGCAATAGTGGAGTGTTTCAATGAGAAAGGTATTAGGTGTGATGTTGGTCTAAAAGGTCTCTGCAAAAAGAAGGGTCTTCATGTTGAGGGCTGTTGA 1044 42.24 MKKLKIPFIHSRLLVFAISIRNVVLGRGYSIINQYSRRPEVYPFQRVLKWQAVLDWTLSLIGVLKGYDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISIVGELDEELDSSLDLSELRAHPLKPVSVLCEHEGPALCLFSSLPFPVDDRYALLLQHSSSSFSPLDFSVMVFAFASSSFPIGNSEGAFDDDDDDDFNLNFSSSSYISERALEELKACRHIRETNLTAAEIARTTLEVCDFVCYILEEITSGSRDEETLSFESKDTQSNHGSTLYKLEIMRIKLFSIYGAQSEINLEDFQDAEPDIPVHSTPAIVECFNEKGIRCDVGLKGLCKKKGLHVEGC 347
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 6247377 6253326 - Conep18aG0091200.1 Cone18ag0886 457847

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone18ag0886 347 PANTHER LSM1 59 132 IPR044642 GO:0000398(PANTHER)|GO:0003723(PANTHER)|GO:0005688(PANTHER)|GO:0016070(PANTHER)|GO:0046540(PANTHER)|GO:0071011(PANTHER)
Cone18ag0886 347 SMART Sm3 43 109 IPR001163 -
Cone18ag0886 347 Pfam LSM domain 54 108 IPR001163 -
Cone18ag0886 347 Gene3D - 52 139 - -
Cone18ag0886 347 SUPERFAMILY Sm-like ribonucleoproteins 53 116 IPR010920 -
Cone18ag0886 347 CDD LSm8 60 129 IPR034103 GO:0000398(InterPro)|GO:0005688(InterPro)|GO:0046540(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone18ag0886 K12627 - - vvi:100247782 125.176
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0059 Cone-Chr17:327905 Cone18ag0886 Cone-Chr18:6247377 2.97E-08 dispersed
Cone18ag0886 Cone-Chr18:6247377 Cone5ag0895 Cone-Chr5:3845643 2.72E-08 dispersed
Cone11ag0613 Cone-Chr11:3818690 Cone18ag0886 Cone-Chr18:6247377 2.94E-41 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1133 . . . . . . . . . . Cma06g01634 Cma14g01495 Car06g01389 Car14g01328 . Cpe08g00094 Cpe03g01256 Bhi01g02638 . . . . . . . . . . . . . . . Cone18ag0886 Cone11ag0626 . . . Cme07g01857 . Blo07g00098 Bda11g00469 . . Bpe13g00729 . Bma06g01430 . Cmo06g01633 Cmo14g01531 . . . . . . . . . . . . . Cla07g01580 Cam07g1677 Cec07g1772 Cco07g1735 Clacu07g1661 Cmu07g1627 Cre07g2001 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008472 1 4 1 3 1 0 1 0 0 1 1 0 1 1 1 1 0 2 1 1 1 1 1 2 2 1 0 2 3 1 35