Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone18ag0891 ATGCGTAGGTGGTTTTGTTGTACTAGTCGGTTCGAAGACGCTTACCCTTTACCCGAAAATGAGATGCTCAAAAGCCCAGGGCATCGTTATGATGGTTATCAGAAGGGCTCAAAATACTCAGGCCCCACCAAATCGGAAGCACAAAAGGCACCACCGCCAATTGAAGTTCCGGCACTGTCTCTGGATGAACTGATACAAAAGACTGATAATTTTGGTTCCAAGGCATTGATTGGTGAAGGATCTTATGGTAGAGTTTATTATGCAACCTTAAATAATGGCAAAACTGTGGCAGTAAAGAAGCTTGATATTTCTTCAGAGCCTGATTCAAATGTTGAGTTTTTAACTCAGGTTTCCAGGGTTTCTAGGTTAAACCATGAAAATCTCGTTCAGTTGCTTGGTTACTGTGTCGAAGACAATATCCGAGTGCTTGGTTATGAATTTGCAACTATGGGTTCCCTACATGACATATTACATGGTAGAAAGGGAGTCCAAGGAGCACAGCCTGGTCCTGTTCTCGATTGGATGCAGCGGGTTAGAATTGCAATCGATGCTGCAAAAGGGTTGGAATACCTGCATGAGAAAGTTCAACCTTCTATAATACACAGAGATATCAGATCGAGCAATGTGCTTCTCTTTGAAGACTTCAAAGCAAAGATTGCAGATTTTAACCTCTCAAATCAGGCTCCAGACATGGCTGCCCGTCTTCATTCAACTCGAGTCTTGGGAACCTTTGGCTATCATGCCCCAGAGTATGCAATGACAGGACAGTTGACGCAGAAGAGTGATGTGTACAGCTTTGGTGTAGTTCTACTTGAGCTTTTAACTGGGAGAAAACCTGTTGATCACACCATGCCCCGTGGACAGCAAAGTCTTGTCACTTGGGCAACTCCAAGGCTGAGTGAAGACAAAGTTAAACAATGTGTGGATCCAAAGTTAAAGGGTGAATATCCACCAAAAGCAGTTGCAAAGCTTGCAGCGGTAGCAGCATTGTGTGTTCAATATGAAGCCGAATTTCGACCAAACATGAGTATTGTCTTAAAAGCTCTTCAACCACTTTTAAGGGCCCCTGCCCCTGCTCAAAAGTCTTGA 1089 43.71 MRRWFCCTSRFEDAYPLPENEMLKSPGHRYDGYQKGSKYSGPTKSEAQKAPPPIEVPALSLDELIQKTDNFGSKALIGEGSYGRVYYATLNNGKTVAVKKLDISSEPDSNVEFLTQVSRVSRLNHENLVQLLGYCVEDNIRVLGYEFATMGSLHDILHGRKGVQGAQPGPVLDWMQRVRIAIDAAKGLEYLHEKVQPSIIHRDIRSSNVLLFEDFKAKIADFNLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLTQKSDVYSFGVVLLELLTGRKPVDHTMPRGQQSLVTWATPRLSEDKVKQCVDPKLKGEYPPKAVAKLAAVAALCVQYEAEFRPNMSIVLKALQPLLRAPAPAQKS 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 6286726 6290490 - Conep18aG0091700.1 Cone18ag0891 457852

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone18ag0891 362 FunFam PTI1-like tyrosine-protein kinase 3 34 147 - -
Cone18ag0891 362 Pfam Protein tyrosine and serine/threonine kinase 76 348 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone18ag0891 362 PIRSF ILK 20 359 - -
Cone18ag0891 362 MobiDBLite consensus disorder prediction 18 52 - -
Cone18ag0891 362 FunFam PTI1-like tyrosine-protein kinase 3 149 359 - -
Cone18ag0891 362 Gene3D Phosphorylase Kinase; domain 1 36 147 - -
Cone18ag0891 362 SMART tyrkin_6 71 349 IPR020635 GO:0004713(InterPro)|GO:0006468(InterPro)
Cone18ag0891 362 ProSiteProfiles Protein kinase domain profile. 71 353 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone18ag0891 362 ProSitePatterns Tyrosine protein kinases specific active-site signature. 199 211 IPR008266 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone18ag0891 362 SUPERFAMILY Protein kinase-like (PK-like) 51 349 IPR011009 -
Cone18ag0891 362 ProSitePatterns Protein kinases ATP-binding region signature. 77 100 IPR017441 GO:0005524(InterPro)
Cone18ag0891 362 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 7 358 IPR052101 -
Cone18ag0891 362 Gene3D Transferase(Phosphotransferase) domain 1 149 360 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone18ag0891 K13436 - - gmx:100790016 614.764
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0585 Cone-Chr14:2898690 Cone18ag0891 Cone-Chr18:6286726 3.03E-222 dispersed
Cone18ag0771 Cone-Chr18:4370225 Cone18ag0891 Cone-Chr18:6286726 5.10E-168 dispersed
Cone18ag0891 Cone-Chr18:6286726 Cone3ag0098 Cone-Chr3:558490 1.12E-174 dispersed
Cone18ag0891 Cone-Chr18:6286726 Cone15ag0598 Cone-Chr15:3064756 2.20E-224 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1140 . . . . . . . Bma05g01241 Cmo08g00086 . Cma06g01635 Cma14g01489 Car06g01390 Car14g01325 . Cpe08g00093 Cpe03g01253 Bhi01g02647 . . . . . . . . . . . . . . . Cone18ag0891 . . . . Cme07g01866 Blo02g00458 Blo07g00096 Bda11g00468 Bda13g00238 . Bpe13g00714 Bma02g00954 Bma06g01451 . Cmo06g01634 Cmo14g01526 . . Car08g00069 . . Cpe17g00994 . . . . . . . . . . . . . . . . . .
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82330 None None None None Cone PK