Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone18ag0894 ATGTACATGAAAATGTGTTTCCTCCCCCAATTGGTAATCATCACATGCTTTCTGATATCAATGGCTTCCCCACTTCTACCCCAACTAAATGATGATGTTTTAGGCTTGATTGTCTTCAAATCAGACCTCCATGACCCCTCTTCATCTCTCTCATCATGGAGTGAAGATGATGACTCACCATGTTCATGGCAGTTCATAAAATGCAACCCCGTTAATGGTAGAGTTTCTGAGCTTTCACTTGACAACTTAGCCTTATCAGGTAAAATCAACAGAGGCCTACAAAAACTACAACACTTGAAGGTACTCTCTCTCTCTCATAACAACCTCACTAGTTCCTCTTCAATCTCTCTTGACCTTTTTTTCCCACCCAGCCTTGAAAAACTTGATCTTAGTCACAACAAGTTTTCATCCCAAATCCCAATTTCTCTACTCGATACAATGAACTCATTGAAATTCCTCGATTTTTCAAACAATTCATTCTTCGGACTGGTCCCTTATAATCTTTTCGAGCAAAGTAGTACTTGTTCACTCCATTACCTTTCTTTAGCTAGAAATAAGTTAGAGGGTCCAATTCCTAGTACATTGTCTAGATGTTTGTATTTGAACAGTCTTAATCTCTCCAACAACCATTTTTCTGGCAACCCGGATTTTGTTTCGGGAATTTGGTTGTTGAATAGGCTCAGAAGACTTGATCTTTCCAACAATTTGCTTTCGGGGTCGCTACCTACTGGAATATCAGGATTGCATTTCTTGAAGGAGCTTTTATTACATACCAATCAGTTTTCAGGACAATTACCTTCTGATCTAGGACTATGTCCTCACTTAACTAGATTGGATTGTAGTAAGAATCTATTCACAGGAACAATACCAGAGTCTCTCCAATTGGTTAGCCCTTTAACTTTCTTCAGCGTAGCGGATAATCAGATTACAGGTCAATTTCCGGAATGGATTGGAAAGATGACTAATCTTGAGTACTTAGACTTGTCAAGAAATGGTTTATCTGGAAGTCTTCCATTTTCAATTAGTGACTTGAAATCAATCAAGCACTTGAGTTTTTCGGTTAACAAACTGGTTGGGAATCTTCCAGAAGGATTGTTTGAGTTGGGATTGGAAGAGATAGATCTTTCGGATAATAAATTTACGGGCTTGATCCCTTTAGGATCAACTAGACTGTTCGAAACTCTTCAGGTGTTGGATCTTTCAAGGAATAATCTCAAAGGGAACTTTCTTGTTACAGAAATGAATATGTATAGTAACTTGAGGTACTTGAATCTGTCATGGAATAATCTTCAGACTAGGATTTCTTCTGATGTGAAGTTTTTTCGGAATTTGACAGTACTTGACCTTAGAAACAGTGGATTATCCGGTTCAATCCCAAGAGATATATGCAGTTCAGAGAGCTTAGATCTTCTTCAACTTGATGGGAATTCATTCACTGGCCCTATCCCGGACCAGATTGGAAATTGCTCGTCACTTTACTTGCTGAGCTTGTCACACAACAAATTAAGTGGTTCAATTCCCAAGACAATTTCAAAGCTTAGCAAACTCAAGATTTTAAAGCTCGAGTTCAATGAACTAAGCGGAGAGATACCAACAGAACTTGGAAGAATGGGGAATCTTCTTGCCTTAAATATATCATACAACCGGCTAACAGGGAAGCTTCCGGAAGGAAGTATTTTCCCGAGCTTGGATCAAAGTGCTTTGCAAGGTAACTTGGGTCTATGCTCACCTCTTCTAAAAGGACCTTGTAAAATGAATGTCCCAAAGCCTCTAGTACTTGACCCGGATGCGTATTTCAATAAAACGGGCCATCATGGAGATGGAGAACATGGATCACCAGAACATTCTGGAAGGTTCCGTCACCATATGTTCCTTAGTGTTTCTTCCATCATAGCGATTTCCGCAGCAGCTTTGATTTGTTGCGGAGTGATAGTCATTACTCTTCTAAATTTATCTGCTGCCAGAAAATCAGTACAATTCATGGAACATACCTTGGAAAGCATATGCTCCTCAAGCTCTTCTACTTCAAAAAAGGGCCCAAGTGCGGCCCAAGGAAAGCTCATTCTATTTGATCGGAGACCGTCATTTTCGGGCCCGTTCGATCAAGAAATGCTATTCAACAAGGGATGTGAGATTGGTGAGGGTGTTTTCGGAACGGTTTACAAGGCGAAGTTAGGATCTCAAGGGCAAATGGTAGCTATCAAGAAGCTTATTACATCAAACACTATAAATTCTCTAGAAGAGTTTGATAGAGAAGTTAGAATCCTAGGAAATTCCAAACACCCAAATATTGTAACCTTAAAAGGGTATTTTTGGACACCTCAAATGCAGCTATTAGTCACAGAATATGCATCAAACGGAAGCTTACAAAGCAAGCTACATGAAAGGATTCCTTCTACTCCACCTCTTTCTTGGACCGAAAGGTTCGAGATTGTGCTTGGAATAGCAAAAGGACTTGCCCATTTACACCATGCGTTCCCCCCACCAATCATCCATTACAACATAAAGCCAAGTAATGTGTTGTTAGACGAGAACAACAACCCGAAAATCTCGGATTTCGGGCTGTTAAGGATTGTCAAGAAGGTGGAGAAGCATATCATAAGAGACAGGTTCCAGAGTGGACTGGGTTACGCGGCACCTGAGATGGCATGTCAAAGGCTGAGGGTGAATGAGAAATGTGATGTGTATGGATTTGGAGTGATGGTGCTTGAGATTGTGAGTGGCAAAAGGCCTTTGGAATATGGTGAGGACCGTGTGGTCATTTTGACTGACCATGTGAGGGCATTGGTTGAGCAAGAGAATGTGATGGGCTGTGTTGATCCGAGCATGGAGGGGGATTATGTGGAGGATGAGGTGGTGCCACTTGTCAAGTTGGCATTGGTCTGTACCTCTCAGTTGCCTTCAAGTAGGCCTTCCATGGCAGAAGTGGTCCAAATATTGCAGCTTATTAGAGCTCCGGTTCCACTGAGAATGGAAGGAGAGTTTTAA 2988 41.1 MYMKMCFLPQLVIITCFLISMASPLLPQLNDDVLGLIVFKSDLHDPSSSLSSWSEDDDSPCSWQFIKCNPVNGRVSELSLDNLALSGKINRGLQKLQHLKVLSLSHNNLTSSSSISLDLFFPPSLEKLDLSHNKFSSQIPISLLDTMNSLKFLDFSNNSFFGLVPYNLFEQSSTCSLHYLSLARNKLEGPIPSTLSRCLYLNSLNLSNNHFSGNPDFVSGIWLLNRLRRLDLSNNLLSGSLPTGISGLHFLKELLLHTNQFSGQLPSDLGLCPHLTRLDCSKNLFTGTIPESLQLVSPLTFFSVADNQITGQFPEWIGKMTNLEYLDLSRNGLSGSLPFSISDLKSIKHLSFSVNKLVGNLPEGLFELGLEEIDLSDNKFTGLIPLGSTRLFETLQVLDLSRNNLKGNFLVTEMNMYSNLRYLNLSWNNLQTRISSDVKFFRNLTVLDLRNSGLSGSIPRDICSSESLDLLQLDGNSFTGPIPDQIGNCSSLYLLSLSHNKLSGSIPKTISKLSKLKILKLEFNELSGEIPTELGRMGNLLALNISYNRLTGKLPEGSIFPSLDQSALQGNLGLCSPLLKGPCKMNVPKPLVLDPDAYFNKTGHHGDGEHGSPEHSGRFRHHMFLSVSSIIAISAAALICCGVIVITLLNLSAARKSVQFMEHTLESICSSSSSTSKKGPSAAQGKLILFDRRPSFSGPFDQEMLFNKGCEIGEGVFGTVYKAKLGSQGQMVAIKKLITSNTINSLEEFDREVRILGNSKHPNIVTLKGYFWTPQMQLLVTEYASNGSLQSKLHERIPSTPPLSWTERFEIVLGIAKGLAHLHHAFPPPIIHYNIKPSNVLLDENNNPKISDFGLLRIVKKVEKHIIRDRFQSGLGYAAPEMACQRLRVNEKCDVYGFGVMVLEIVSGKRPLEYGEDRVVILTDHVRALVEQENVMGCVDPSMEGDYVEDEVVPLVKLALVCTSQLPSSRPSMAEVVQILQLIRAPVPLRMEGEF 995
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 6312411 6315829 - Conep18aG0092000.1 Cone18ag0894 457855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone18ag0894 995 ProSiteProfiles Leucine-rich repeat profile. 98 119 IPR001611 GO:0005515(InterPro)
Cone18ag0894 995 SMART LRR_sd22_2 224 250 - -
Cone18ag0894 995 SMART LRR_sd22_2 122 143 - -
Cone18ag0894 995 SMART LRR_sd22_2 489 515 - -
Cone18ag0894 995 SMART LRR_sd22_2 96 117 - -
Cone18ag0894 995 SMART LRR_sd22_2 320 346 - -
Cone18ag0894 995 SUPERFAMILY Protein kinase-like (PK-like) 706 984 IPR011009 -
Cone18ag0894 995 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 784 989 - -
Cone18ag0894 995 ProSiteProfiles Leucine-rich repeat profile. 124 145 IPR001611 GO:0005515(InterPro)
Cone18ag0894 995 ProSitePatterns Protein kinases ATP-binding region signature. 712 736 IPR017441 GO:0005524(InterPro)
Cone18ag0894 995 PANTHER LEUCINE RICH REPEAT KINASE 2 251 981 IPR051420 -
Cone18ag0894 995 SUPERFAMILY L domain-like 298 564 - -
Cone18ag0894 995 Pfam Leucine Rich repeat 96 111 IPR001611 GO:0005515(InterPro)
Cone18ag0894 995 Gene3D Phosphorylase Kinase; domain 1 706 787 - -
Cone18ag0894 995 Gene3D Ribonuclease Inhibitor 29 174 IPR032675 -
Cone18ag0894 995 SMART LRR_typ_2 147 171 IPR003591 -
Cone18ag0894 995 SMART LRR_typ_2 513 537 IPR003591 -
Cone18ag0894 995 SMART LRR_typ_2 224 247 IPR003591 -
Cone18ag0894 995 SMART LRR_typ_2 441 465 IPR003591 -
Cone18ag0894 995 SMART LRR_typ_2 344 368 IPR003591 -
Cone18ag0894 995 SMART LRR_typ_2 96 122 IPR003591 -
Cone18ag0894 995 SMART LRR_typ_2 248 272 IPR003591 -
Cone18ag0894 995 SMART LRR_typ_2 320 343 IPR003591 -
Cone18ag0894 995 SMART LRR_typ_2 123 146 IPR003591 -
Cone18ag0894 995 Gene3D Transferase(Phosphotransferase) domain 1 788 985 - -
Cone18ag0894 995 FunFam Leucine-rich repeat receptor-like protein kinase 29 192 - -
Cone18ag0894 995 PRINTS Leucine-rich repeat signature 227 240 - -
Cone18ag0894 995 PRINTS Leucine-rich repeat signature 320 333 - -
Cone18ag0894 995 Pfam Leucine rich repeat N-terminal domain 29 69 IPR013210 -
Cone18ag0894 995 Pfam Leucine Rich Repeat 124 143 IPR001611 GO:0005515(InterPro)
Cone18ag0894 995 Pfam Leucine Rich Repeat 468 489 IPR001611 GO:0005515(InterPro)
Cone18ag0894 995 Pfam Leucine Rich Repeat 491 513 IPR001611 GO:0005515(InterPro)
Cone18ag0894 995 Pfam Leucine Rich Repeat 274 294 IPR001611 GO:0005515(InterPro)
Cone18ag0894 995 Pfam Leucine Rich Repeat 443 464 IPR001611 GO:0005515(InterPro)
Cone18ag0894 995 Pfam Leucine Rich Repeat 226 248 IPR001611 GO:0005515(InterPro)
Cone18ag0894 995 Pfam Leucine Rich Repeat 176 198 IPR001611 GO:0005515(InterPro)
Cone18ag0894 995 Pfam Leucine Rich Repeat 419 437 IPR001611 GO:0005515(InterPro)
Cone18ag0894 995 Pfam Leucine Rich Repeat 370 386 IPR001611 GO:0005515(InterPro)
Cone18ag0894 995 Pfam Leucine rich repeat 302 357 IPR001611 GO:0005515(InterPro)
Cone18ag0894 995 Pfam Protein kinase domain 707 978 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone18ag0894 995 Gene3D Ribonuclease Inhibitor 297 589 IPR032675 -
Cone18ag0894 995 CDD STKc_IRAK 712 983 - -
Cone18ag0894 995 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 701 783 - -
Cone18ag0894 995 ProSiteProfiles Protein kinase domain profile. 706 983 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone18ag0894 995 FunFam Probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 193 290 - -
Cone18ag0894 995 Gene3D Ribonuclease Inhibitor 176 296 IPR032675 -
Cone18ag0894 995 SUPERFAMILY RNI-like 77 408 - -
Cone18ag0894 995 FunFam Inactive leucine-rich repeat receptor-like protein kinase 293 586 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone18ag0894 Cone-Chr18:6312411 Cone19ag1453 Cone-Chr19:9435329 9.06E-102 dispersed
Cone18ag0894 Cone-Chr18:6312411 Cone14ag0675 Cone-Chr14:3469790 4.76E-106 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82331 None None None None Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone18ag0894 - - - 0.0