Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone18ag0895 ATGTCCTTTCAACATCAAGAGGTGGATGAATTTGATTACATGGCGGAAGGAGGTGAAGTGGGCAATCTGGATAATGATATAGACGATGAAGTTGCGGGTGAAAATGATTATGAAATGCTTACGAAGGTGACTGATACGTCATCTGCCCAAGCAAGGAAAGGAAAAGACATTCAAGGTATTCCGTGGGATAGATTGAACATAACACGCCAAAAGTATAGGTTGACAAGGCTGGAAGAGTATAGGAATTATGAGAATATTCCTTCATCAGGAGAAACTATGGACAAGGAGTGCAAACCAATGGAGAAGGGTGGACATTACTACGATTTTTTCTATAATACCAGATTGGTCAAGCCTACCATCCTCCATTTTCAGCTTAGGAACCTGGTTTGGGCCACTTCTAAACATAATGTCTATTTGATGTCCAACTATTCAGTTATGCACTGGTCATCATTAACTGGAAACTTGTCAGAGATCCTCAACTTTTCAGGGCATGTAGCACCTAGAGAGAAATATGCAGGAAGCTTACTGGAAGGCTTCACACAAACTCAGATTAGCACACTGGCAGTGAAGGGAAATTTTTTAGTTGCAGGTGGATTCCAAGGAGAGCTTACTTGTAAGCATTTGGATAAACAAGGAGTAAGTTTCTGTACGCGAACAACGTGTGATGATAATGCCATCACAAACGCCATTGAGATATATGACAGCTTGAGTGGTGGAATACATTTCATGGCATCAAATAATGATTGCGGTCTAAGAGAATATAACATGGAGAAGTTTCAGCTATTGAATCACATCCGTTTCCCTTGGCCAGTAAATCATACATCGATGAGCCCAGACCGTAGGCTTATTGCTGTAGTTGGAGACCACACAGATGGATTGCTTGTCGATTCACATAATGGAAAGACAATTGCTACTGTATCTGGTCATAGAGACTACTCTTTTGCTTCCGCATGGCACCCAGATGGCTGCACTTTTGCTACTGGAAATCAGGATAAGTCATGCAGAGTATGGGATATAAGAAACTTATCATCATCCCTTGCAATACTAAAAAACAACCTGGGTGCTTCTAGGTCCATCCGTTATTCATCGGACGGTCAATTCATGGTTGTAGCAGAGCCTGCAGATTTTGTCCATGTCTACAGCACGAAAGGAGATTATACGAAGCAGCAAGAGATTGATTTCTTTGGCGAGATTTCGGGCGTGTCTATGAGCCCAGATGATGAATCTTTGTATATAGGAATCTGGGACCGGACGTATGCTAGCTTGCTTCAGTATAATAGAAGGCATGAATATGGATATCTTGATTCCTTTTAG 1314 41.63 MSFQHQEVDEFDYMAEGGEVGNLDNDIDDEVAGENDYEMLTKVTDTSSAQARKGKDIQGIPWDRLNITRQKYRLTRLEEYRNYENIPSSGETMDKECKPMEKGGHYYDFFYNTRLVKPTILHFQLRNLVWATSKHNVYLMSNYSVMHWSSLTGNLSEILNFSGHVAPREKYAGSLLEGFTQTQISTLAVKGNFLVAGGFQGELTCKHLDKQGVSFCTRTTCDDNAITNAIEIYDSLSGGIHFMASNNDCGLREYNMEKFQLLNHIRFPWPVNHTSMSPDRRLIAVVGDHTDGLLVDSHNGKTIATVSGHRDYSFASAWHPDGCTFATGNQDKSCRVWDIRNLSSSLAILKNNLGASRSIRYSSDGQFMVVAEPADFVHVYSTKGDYTKQQEIDFFGEISGVSMSPDDESLYIGIWDRTYASLLQYNRRHEYGYLDSF 437
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 6332936 6338746 - Conep18aG0092100.1 Cone18ag0895 457856

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone18ag0895 437 SMART WD40_4 299 338 IPR001680 GO:0005515(InterPro)
Cone18ag0895 437 SMART WD40_4 342 381 IPR001680 GO:0005515(InterPro)
Cone18ag0895 437 PANTHER WD REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_8G05640)-RELATED 9 434 - -
Cone18ag0895 437 Pfam WD domain, G-beta repeat 300 338 IPR001680 GO:0005515(InterPro)
Cone18ag0895 437 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 306 341 - -
Cone18ag0895 437 SUPERFAMILY WD40 repeat-like 142 418 IPR036322 GO:0005515(InterPro)
Cone18ag0895 437 Gene3D - 239 432 IPR015943 GO:0005515(InterPro)
Cone18ag0895 437 ProSiteProfiles Trp-Asp (WD) repeats profile. 306 347 IPR001680 GO:0005515(InterPro)
Cone18ag0895 437 FunFam WD-40 repeat family protein 219 435 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone18ag0895 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag1270 Cone-Chr14:10167595 Cone18ag0895 Cone-Chr18:6332936 1.17E-220 dispersed
Cone15ag1296 Cone-Chr15:10143063 Cone18ag0895 Cone-Chr18:6332936 7.41E-217 dispersed
Cone17ag1231 Cone-Chr17:8924633 Cone18ag0895 Cone-Chr18:6332936 2.90E-157 dispersed
Cone18ag0895 Cone-Chr18:6332936 Cone20ag0496 Cone-Chr20:2646648 8.61E-161 dispersed
Cone11ag0609 Cone-Chr11:3763079 Cone18ag0895 Cone-Chr18:6332936 2.15E-275 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1084 . . Bda03g01080 . Bpe04g00995 . Bma04g00994 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone18ag0895 Cone11ag0609 . . . . Blo02g00418 Blo07g00077 . . . . Bma02g00997 Bma06g01409 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000780 3 4 6 6 3 2 3 2 2 2 2 2 3 2 2 2 2 4 3 2 2 2 2 2 3 2 1 11 7 2 91