Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone18ag0897 ATGCATTCTCTTCGTGTTTTTCACGCCTCAACAGCAAGAACAAGTACAAGCTGTTCAAATATCCATTCCTCTAAATTCAAGCAATTCTCAAAGAAGAGTGGTAATCAGGTCGTTCGTTTTCCTTTTCTCCTTCTTAATCACCATTGCAGATCCAACCCATCTTCTCGTATCGTTTGCGGCGTTTCCTCTGCTACCCAATCGGATACAAGGGAGGGCGAGAAGAAAAAGATGAAATCGAAAACGGGTCATGGGAAGGTGAGGGTGAGGGTAACGTTAGACCATCAAGTCGAATATGGCGAGCAAGTGGTGGTTCTAGGCTCGAAGAAAGAATTAGGTTCATGGAAGAAGAATGTTCCTCTAAATTGGACTGAGTCTGGATGGGTTTGCAATTTGGACTTTAAAGGGAACGAAGGAGGAGAAGAGTCTATTGAATTCAAATTTGTTGTTGTGAAGAAGGATAAGAGCTTGCAGTGGGAAGGAGGAGATAATAGGGCCCTTAAGCTGCCTAAGGGAGGAGGGTCCTTTAGCTTAGTTTGTAAATGGAATGTTACGGAACAGGCTGCGGATTTGGTGCCATTGGATTTGGATGAGGAGGAGGATTACAAGGTAGTTGTAAAAGAGGAGGTGGTGAGTAAAAATGGGTCTTTAGTTGATGTCGAATTGAGCCCTTTTGTAGGGCAATGGCAAGGGAAGCAGGCTTCGTTTATGCGATCGAATGAGCATGAGAATAGAGAAAGTGAGAGGAGATGGGATACTTCTGGTCTTCAGGGTTTCGCTTTGAAGTTGGTAGAAAGTGATCGGAATGCTCGGAATTGGTGGAGAAAGCTTGAAGTAGTACGCGAGCTCTTAGTTGCAAGTTTGGACATTGAGGAACGCTTGGAGGCACTCATATATTCTTCGATCTACCTGAAGTGGATAAACACTGGTCAAATTCCTTGCTTTGAAGATGGAGGTCACCACCGGCCAAACAGGCATGCTGAGATTTCCAGGCTTATATTCCGTGAATTGGAACGCATCTCCTCTGGGAAAGATACTTCTCCAGAGGAAGTTCTTGTTGTCCGTAAGATTCATCCATGTCTGCCATCTTTTAAAGCAGAATTCACTGCCTCTGTTCCCTTAACTCGCATTAGAGATATTGCTCACCGAAATGATATCCCTCATGACCTCAAGCAAGAAATCAAACATACGATACAAAACAAGCTTCATCGTAATGCTGGTCCAGAAGATTTGATTGCCACAGAAGCCATGCTTGCAAGAATAACCCAAAATGCTGGGCAATATAGTGAAGCATTTGTGGGGCAGTTCAAAATATTCCATCATGAGCTGAAAGATTTCTTCAATGCTGGAAGCCTTGCAGAACAGCTTCAATCAATCAAGGAATCAATGGATGGAAAGGGTATTTCAGCTCTTACGAATTTTCTAGAGTGCAAAAAGAATTTGGATGCTGTTGAAGGTTCAAGCAGTCTGTTGGAAAATAAAGGTGCTGACCTTTTATTCAAAACCACACAATCTCTAAATGCTTTGAGAGAAGTTATTGTAAAAGGTCTAGAAAGTGGTCTAAGAAACGATGCCCCTGATGCTGCAATAGCTACACGTCAAAAGTGGCGTCTTTGCGAGATTGGCCTTGAGGACTACTTGTTTGTTCTTATGAGCAGATTCCTCAATGTGCTTGAAGCTACAAGAGGAGCTCATTGGCTGGCAGAAAATGTTGAATCAAAGAACGTGAGCTCTTGGAACGATCCACTCGGTGTCCTTATCTTTGGTGTTCATCAGCTGGGTTTATCTGGTTGGAAGCCTGAAGAGTGTGGAGCTATCAAAAATGAGCTTCTTGCTTGGAAAGAGAGAGGTCTCTCCAAGAGGGAAGGAAGTGAAGATGGTAAGAGAATTTGGGCGTTGAGGCTTAAGGCTACTCTTGACAGAGTGAGAAGGCTGACTGAAGAATACTCTGAAGAACTTTTGAAAATATTCCCAGAGAAAGTCCAAATGCTGGGCAAAGCTCTTGGAATCCCTGAGAATAGTGTCAAAACTTATGCCGAGGCTGAGATCCGTGCCAGTGTAATTTTCCAGGTCTCTAAGCTTTGCACACTCCTATTAAAAGCTGTTAGAAGCACTATTGGTTCTCAGGGTTGGGACGTTCTTGTTCCTGGAGATGTGCTTGGAACTTTAGTTGAGGTTGAAAGAATCGTACCCGGATCTCTTCCTCAATCAGTAAATGGACCTGTAATTCTTATGGTCAACAAAGCCGATGGAGATGAGGAGGTAACAGTTGCTGGGAGTAACATAGTTGGAGTAGTACTTCTTCAAGAGCTGCCTCACTTATCTCATCTTGGTGTTCGAGCGAGACAGGAGAAAGTTGTGTTTGTAACATGTGAGGATGAGGATAAAGTAGCTGATTTACAAAAACTTGCTGGAAAATCTGTCAGGTTGGATGCATCGTCTACAGCTGTTAACATAATCCCATCGTCAGATAGTAGCTTTAGCAACTCTTCAGTGAAAGATCTTTCAGCTGATAATTCTTCATCTGGAACCATAGCATCGGAGCAGACTTCTCCTTCCCAGTCTTCTATTAAAGCTCCTTACTCCAATCGGGGAATATTGGGTGGAGTTATATTGCTTGCTGATGCAGATGCACAGGTTGCAGGTGCAAAAGCAGCTGCTTGTGGCCGTTTAGCTTCTTTAGCAGCAGTTTCCAATAAAGTTTATAGTGATCAAGGTGTGCCAGCCACTTTCCAGGTCCCAGCTGGGGCAGTAATACCATTCGGTTCAATGGAATCAGCCTTAGAGCAAAGCAATGCCACAGATGCATTCAAATCCCTCATAGAACAAATCGAATCCGCCAAAGTAGAAGACGGACAATTAGACCAACTCTGCTCTCAACTGCAAGAACTAATATCTTCTCTAAAGCTCCCCAATGATGTCATCAATAGCATTGCAAGAATTTTTCCTACAAATGCTCGCTTAATTGTCCGTTCAAGTGCTAATGTCGAGGACTTGGCTGGAATGTCAGCAGCAGGACTATATGACTCAATTCCAAATGTCAGTCCCACTAACCCGACCATTTTTGGGAATGCAGTTAGCCGAGTATGGGCCTCGCTCTACACTAGGCGAGCTGTTCTGAGCCGTCAAGCCGCTAATGTGCCTCAAAACCAAGCCACCATGGCCATTCTAGTGCAGGAAATGCTTTCCCCAGACTTATCCTTCGTGTTGCACACTCTTAGCCCGACTGATCAAGATCATAAATTTGTTGAGGCCGAGATTGCATCCGGGCTCGGTGAAACTTTGGCATCAGGCACTCGTGGGACCCCCTGGCGTCTGTCATCCGGGAAGTTTGATGGGTCGGTCCGGACACTCGCCTTTGCAAACTTCAGCGAGGAGCTTGTGGTGCTTGGTGCAGGTCTTGCGGACGGGGAAGTGATTCAATTGACGGTTGACTATAGTAAGAAGCCGTTGACCATTGACCCGATATTCCGTCGTCAACTCGGTCAACGGCTTTGTGCTGTCGGGTTTTTCTTGGAGCGCAAGTTTGGATCTCCGCAAGATGTTGAAGGGTGTGTTGTTGGAAAAGACATCTACATAGTACAAACACGACCACAGCCCCAATAG 3603 44.74 MHSLRVFHASTARTSTSCSNIHSSKFKQFSKKSGNQVVRFPFLLLNHHCRSNPSSRIVCGVSSATQSDTREGEKKKMKSKTGHGKVRVRVTLDHQVEYGEQVVVLGSKKELGSWKKNVPLNWTESGWVCNLDFKGNEGGEESIEFKFVVVKKDKSLQWEGGDNRALKLPKGGGSFSLVCKWNVTEQAADLVPLDLDEEEDYKVVVKEEVVSKNGSLVDVELSPFVGQWQGKQASFMRSNEHENRESERRWDTSGLQGFALKLVESDRNARNWWRKLEVVRELLVASLDIEERLEALIYSSIYLKWINTGQIPCFEDGGHHRPNRHAEISRLIFRELERISSGKDTSPEEVLVVRKIHPCLPSFKAEFTASVPLTRIRDIAHRNDIPHDLKQEIKHTIQNKLHRNAGPEDLIATEAMLARITQNAGQYSEAFVGQFKIFHHELKDFFNAGSLAEQLQSIKESMDGKGISALTNFLECKKNLDAVEGSSSLLENKGADLLFKTTQSLNALREVIVKGLESGLRNDAPDAAIATRQKWRLCEIGLEDYLFVLMSRFLNVLEATRGAHWLAENVESKNVSSWNDPLGVLIFGVHQLGLSGWKPEECGAIKNELLAWKERGLSKREGSEDGKRIWALRLKATLDRVRRLTEEYSEELLKIFPEKVQMLGKALGIPENSVKTYAEAEIRASVIFQVSKLCTLLLKAVRSTIGSQGWDVLVPGDVLGTLVEVERIVPGSLPQSVNGPVILMVNKADGDEEVTVAGSNIVGVVLLQELPHLSHLGVRARQEKVVFVTCEDEDKVADLQKLAGKSVRLDASSTAVNIIPSSDSSFSNSSVKDLSADNSSSGTIASEQTSPSQSSIKAPYSNRGILGGVILLADADAQVAGAKAAACGRLASLAAVSNKVYSDQGVPATFQVPAGAVIPFGSMESALEQSNATDAFKSLIEQIESAKVEDGQLDQLCSQLQELISSLKLPNDVINSIARIFPTNARLIVRSSANVEDLAGMSAAGLYDSIPNVSPTNPTIFGNAVSRVWASLYTRRAVLSRQAANVPQNQATMAILVQEMLSPDLSFVLHTLSPTDQDHKFVEAEIASGLGETLASGTRGTPWRLSSGKFDGSVRTLAFANFSEELVVLGAGLADGEVIQLTVDYSKKPLTIDPIFRRQLGQRLCAVGFFLERKFGSPQDVEGCVVGKDIYIVQTRPQPQ 1200
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 6358146 6365498 - Conep18aG0092300.1 Cone18ag0897 457858

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone18ag0897 1200 SUPERFAMILY Glutathione synthetase ATP-binding domain-like 875 1198 - -
Cone18ag0897 1200 Gene3D - 871 1060 IPR013815 GO:0005524(InterPro)
Cone18ag0897 1200 ProSiteProfiles CBM20 (carbohydrate binding type-20) domain profile. 78 183 IPR002044 GO:2001070(InterPro)
Cone18ag0897 1200 Pfam Pyruvate phosphate dikinase, AMP/ATP-binding domain 890 1198 IPR002192 GO:0005524(InterPro)|GO:0016301(InterPro)|GO:0016310(InterPro)
Cone18ag0897 1200 Pfam Alpha-glucan water dikinase, phosphohistidine-like domain 709 823 IPR054481 -
Cone18ag0897 1200 Gene3D Immunoglobulins 83 182 IPR013783 -
Cone18ag0897 1200 MobiDBLite consensus disorder prediction 61 84 - -
Cone18ag0897 1200 SMART CBM_20_2 85 178 IPR002044 GO:2001070(InterPro)
Cone18ag0897 1200 PANTHER PHOSPHOGLUCAN, WATER DIKINASE, CHLOROPLASTIC 16 1200 - -
Cone18ag0897 1200 SUPERFAMILY Starch-binding domain-like 84 179 IPR013784 GO:0030246(InterPro)
Cone18ag0897 1200 Pfam Starch binding domain 86 172 IPR002044 GO:2001070(InterPro)
Cone18ag0897 1200 MobiDBLite consensus disorder prediction 837 857 - -
Cone18ag0897 1200 Gene3D - 1062 1198 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone18ag0897 K15535 - - rcu:8280938 1642.86
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1070 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone18ag0897 . . . . . Blo02g00408 Blo07g00074 . Bda13g00296 . Bpe13g00749 Bma02g01001 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004547 2 0 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 2 2 1 1 3 3 1 42