Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone18ag0900 ATGGTCGCGGTGAACGCGGCGCTGGGAACATTGGTAATGGTACTCAACCGGTGGCTACAACTCAGTCGGACTCCGCCACTAGTTGCAAAAGCATTAGCGTCTCCGGCGCCTGCTTCCACTTCTTCAGCGCCGTCTATGCCGTCTTCGACTCAGGCGCCGGCTCCGGTATCTAGTCCGGCGGCTAATCCTCCGCAGACTCAGAGTTCTGCGGCTCCTGCTCCTGTTTCCGTTGTGTCTACAACAGCCTCGGCGATTGGGACTTCCTTGAACAGTGAGGTCGAGAAGAAGCTTGTACTTCAGTCGCCTCCTCCGTCTTCGTCGAAGGCGCTGCGTTTTCCACAGAGGCCTGGATATGGTACCATTGGCACAAAAATTCTTGTTCGGGCTAATCATTTTCTAGTGGAGATTGCAGACAGGGATCTTCATCAATACGATGTGTCCATGATTCCTGAAGTTACCTCCAAGAAAGTTTGTAGAGATGTGATGAAGGTGCTTTCAGATTTGCATCGTGCATCACACTTGGGTGGGAGAATGAAAATCCGTGAATACCGAGTGACCATCAAATTTGCCTCCAAGCCTGACCTGCATCATCTACAACAGTTTATAAGTGGTAGGCAGCTGGATTTGCCTCAAGAGACTATTCAAGTGCTTGACGTAGTTCTTCGAGCATCTCCATCCGAGAAGTGCACAGTCATTGGGAGGTCTTTTTTTGCACCTAATTTAGGGCCAAAGGGTGAGTCTGGAAGGGGAGACCTTGGCAATGGTCTTGAATATTGGAGGGGGTTTTATCAAAGCCTTTGTCCAACCCAGATGGGATTGTCACTTAATGTTGATATCTCTGCAACATCTTTCTATGATGCAATTCCAGTAACAGATTTCATTAAAAAACATTTTAATTTTAGAGATACTTCAAGGCTGTTATCCGATCAAGATCGTGTTAAGATCAAGAGGGCTTTGAGAGGAGTTAGGGTGGAAGTAACTCATCAGGGAAATTCAAAAAAATACAAAATTACTGGAGTGTCATCCCTACTTTTAAGCCAACTCACGTTCCCTTTGGAGGATGGCTCAAGGATGTCAGTTGTTAAATATTTCCGTGAGAAGTATGGTGTTGTGCTTAAAGATGTGGCTCTTCCCGCTCTACAAGCTGGAAAAGATTCAAATCCTGTGTTTTTGCCTATGGAGGTCTGTCAAATAGTTTCTGGACAAAGATATACTAAGAAGTTGAATGAGGCACAAGTAACTGCTCTATTAAGAAAAACTTGTCGGCGACCAGATCTGAGGGAAGAGGACATAAAGCAGATGGTGGAGCGGAGTAATTTCAATGAGGACAAGCTTGTAAGTAATGAATTCGGGATTCGAGTGAAGGAACAACTGACTTTGGTTGAGGCTCGTGTTTTACCACCTCCTATGGCTCAATTCTTCAAAAAAATGATTGATGGCGGTCGAGTGGAAATCTGGCCCTGCATTAATTTCTCTACACGAGTGCATCCAAACTTGCCAGTTGACTTTTGTGGGGAGTTGGTCAATATGTGCAACAGTAAGCGAATGAATTTCAATCCTGATCCATTGATTCCCATACGTTCTGCTAACCCTGCTCAAATTGAAAGGGCTCTTAATGAGGTGCACAAGCAATCACAAATTGAACTTAAGAGGAGGGGGCAGGAGAATAAACGGCTGCAGCTTCTAATCATTATTTTGCCTGATAAAACTGGATCCTATGGAACGATAAAACGAGTGTGTGAAACTGAACTTGGTATCATCTCTCAGTGCTGTCAGCCTAAGGAAGCATCAAAGCTCAAGAAACAGTATTTCGAAAATTCGGCCCTTAAAATCAATGTTAAGGTTGGGGGACGAAACACTGTGATGAATGATGCTATTCATGGAAGGATGCCTCTTGTGAATGATCGCCCGACAATAATTTTCGGGGCTGATGTAACACATCCACAACCTGGGGAAGACTCTAGCCCTTCAATAGCAGCGGTGGTTGCTTCCATGGACTGGCCTGAGGTGACCAAGTACAGAGGGATTGTCGTTGCGCAAGAGCACCGTCAGGAGATTCTTCAAGATCTCTTCAAAACTTTCCGAGATCCTCAGAAAGGAGAAGTCAGTGAAGGCATTGTTAGAGAATTACTAATTGCATTCAGACAATCAACCGGATATAAACCACATAGAATAATATTCTACAGATGGTACTCCAATCGAAAATTACTTGATTGTGCAGTTCCTCCAGCTTATTATGCCCACTTAACTGCTTTCCAAGCACGTTACTACATCAAAGGCAATGCCTCAGACAGTGCATCCACAGAGGGAGTCAGAAGTTCAGAGTTCCGTCCCCTTTCAACCATTCAGGAGCATATCAAAGATGTGATGTTCTTCTGTTGA 2382 44.84 MVAVNAALGTLVMVLNRWLQLSRTPPLVAKALASPAPASTSSAPSMPSSTQAPAPVSSPAANPPQTQSSAAPAPVSVVSTTASAIGTSLNSEVEKKLVLQSPPPSSSKALRFPQRPGYGTIGTKILVRANHFLVEIADRDLHQYDVSMIPEVTSKKVCRDVMKVLSDLHRASHLGGRMKIREYRVTIKFASKPDLHHLQQFISGRQLDLPQETIQVLDVVLRASPSEKCTVIGRSFFAPNLGPKGESGRGDLGNGLEYWRGFYQSLCPTQMGLSLNVDISATSFYDAIPVTDFIKKHFNFRDTSRLLSDQDRVKIKRALRGVRVEVTHQGNSKKYKITGVSSLLLSQLTFPLEDGSRMSVVKYFREKYGVVLKDVALPALQAGKDSNPVFLPMEVCQIVSGQRYTKKLNEAQVTALLRKTCRRPDLREEDIKQMVERSNFNEDKLVSNEFGIRVKEQLTLVEARVLPPPMAQFFKKMIDGGRVEIWPCINFSTRVHPNLPVDFCGELVNMCNSKRMNFNPDPLIPIRSANPAQIERALNEVHKQSQIELKRRGQENKRLQLLIIILPDKTGSYGTIKRVCETELGIISQCCQPKEASKLKKQYFENSALKINVKVGGRNTVMNDAIHGRMPLVNDRPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVTKYRGIVVAQEHRQEILQDLFKTFRDPQKGEVSEGIVRELLIAFRQSTGYKPHRIIFYRWYSNRKLLDCAVPPAYYAHLTAFQARYYIKGNASDSASTEGVRSSEFRPLSTIQEHIKDVMFFC 793
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 6382469 6389572 + Conep18aG0092600.1 Cone18ag0900 457861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone18ag0900 793 Gene3D - 474 627 - -
Cone18ag0900 793 SMART DUF1785_2 230 287 IPR014811 -
Cone18ag0900 793 MobiDBLite consensus disorder prediction 36 75 - -
Cone18ag0900 793 ProSiteProfiles Piwi domain profile. 561 729 IPR003165 GO:0003676(InterPro)
Cone18ag0900 793 Pfam Piwi domain 562 729 IPR003165 GO:0003676(InterPro)
Cone18ag0900 793 SMART Piwi_a_2 561 759 IPR003165 GO:0003676(InterPro)
Cone18ag0900 793 Pfam Argonaute linker 1 domain 232 285 IPR014811 -
Cone18ag0900 793 SUPERFAMILY PAZ domain 282 441 IPR036085 GO:0005515(InterPro)
Cone18ag0900 793 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 115 729 - GO:0003723(PANTHER)|GO:0004521(PANTHER)|GO:0005737(PANTHER)|GO:0035194(PANTHER)
Cone18ag0900 793 Pfam PAZ domain 292 416 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Cone18ag0900 793 Gene3D - 629 735 IPR036397 GO:0003676(InterPro)
Cone18ag0900 793 Gene3D - 739 793 IPR036397 GO:0003676(InterPro)
Cone18ag0900 793 CDD PAZ_argonaute_like 287 399 - -
Cone18ag0900 793 Gene3D paz domain 281 404 - -
Cone18ag0900 793 ProSiteProfiles PAZ domain profile. 289 400 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Cone18ag0900 793 SUPERFAMILY Ribonuclease H-like 556 729 IPR012337 -
Cone18ag0900 793 Pfam N-terminal domain of argonaute 176 221 IPR032474 -
Cone18ag0900 793 SMART PAZ_2_a_3 292 416 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Cone18ag0900 793 Pfam Argonaute linker 2 domain 427 470 IPR032472 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone18ag0593 Cone-Chr18:2966035 Cone18ag0900 Cone-Chr18:6382469 0 dispersed
Cone18ag0900 Cone-Chr18:6382469 Cone19ag0371 Cone-Chr19:3158324 2.72E-231 dispersed
Cone11ag0605 Cone-Chr11:3730042 Cone18ag0900 Cone-Chr18:6382469 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone18ag0900 K11593 - vvi:100258447 826.239