Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone18ag0903 ATGGGTCGGCTAAGATCCTCCTCTCTTTCTCGCTCTACACTCATTATCTTGTCTCTCCTCACCATCCTGTCCGCCGTAGCGGCCGATGATGCCGACATCATGGCCAAGCTGGCGGCGGCGCTTGCACCCAAGCCTAGCGACTGGAAATCTACCGCCACTAACGGGGGATACTGCAAATGGAGCGGCATCACCTGCGACTCCTCGAACCGCGTGATCTCCCTCAAGCTGGATTCTCAGTCGCTCTCCGGCACACTTCCGGCCGATCTCAACTCTCTCTCACAGCTCACCTCCCTGGCTCTCCAGAAGAACTCTCTATCTGGCCCTCTACCTTCTCTCTCTAACCTCTCCTCACTCCAAACGCTTTACCTCGACAACAACAACTTCACTTTAATCCCCTCCAATTGCTTCCAAGGCCTTACGAGCTTGCAGACCTTAAGCTTGACCCAGAACTTAAATCTCGCTCCCTGGACGATTCCGACTGTGTTGACTCACTCGGCCAGTCTCGAAACTCTGTATATCGGAAACGCCAACGTCTTCGGGCCCATACCGGATTTCTTTGATTCATTCACCAGCTTACAAGCTCTTCGCCTTTCTTACAACAATCTTACTGGGCCCCTCCCTCCGTCCCTGGCTCGTTCAAATATTCAGAATCTCTGGCTCAACAATCAGCTTATCGGCTTATCTGGCTCGATCGGAGTTTTATCATCAATGACCCAATTATCACAAGTTTGGCTCCAGAAGAATCTATTCACTGGTCAGATTCCAGACTTATCAAAATGCGAGAACCTGTTTGATCTTCAGCTTCGTGATAATCAAATTACTGGAATCGTGCCGCAATCGTTAATCCAACTCTCTAGCTTGCAAAACGTGTCTTTGGCAAACAACAAGCTGCAAGGCCCTCTGCCTGTGTTTGGATCAAAAGTCACCGCCATTGTTGACGGTACTAACAGCTTCTGCAAGACCACAACAGGGCCTTGTGATGCTCAAGTTACGACTTTGCTTGAGGTTGCTGGATCTTTTGGGTATCCAGTTTCGCTTGCCGATTCTTGGACAGGTAATAGTGCATGCAAATGGAGTTTTATTACTTGCTTGAATAATAGCGTTTCTAGTATTAATATGGGAAAGCAGCGTTTAGAAGGAACGATTTCTCCATCTTTTGCGAATCTGACGTCGTTGAAGAATTTGCGTCTTAATGATAATAATTTGACTGGTTCTATACCTGATAGCTTGACCACCTTGCCCCTACTTGCTGTTCTTGATGTTTCTAATAACAATCTTAGTGGAATAGTACCAAAATTTTCATCTACTGTACAGTTAACAACTAGTGGTAATCCCTTACTTGGGACAGTCTTGAGCCCTGGAAGTGGGGACAATTCGAATACTAACGGGTCTAGTAAGGGCCAGTCTGGATCGTCCAGTGTTTCGTCGGTGTCTCCTGGTATGATTGCTGGAGTAGTTATTTCTGTTATTGTGTTTGTTGCTGTCATGTTGTTTGTAGTGTTCAAATGTTATGTGAAGAACCGAAATAAAAAACATTGGGTAGTGAAAAATCTCAAAAAGAATGAGAAGGAAAATATTAGGAGTAAAATTCAGAGCACTACTGTAAAAAGCAACGAAGGGGTTCCAAGTGAGTTACATAGTCAAACCAGTGGCGACCATGGTAATATCAATGTTTTCGAGGGTGGAAATGTAACTATTTCGATCCAGGTGTTGAAGGAAGTGACTAATGATTTTAGCGAACATAACATCTTGGGAAGGGGAGGATTTGGAGTGGTTTACAAAGGGGAATTACATGATGGGACTAAAATTGCTGTAAAGAGGATGGAATCTATGGCAGCAAGTACAAAAGGATTGAATGAATTCCAAGCAGAAATTGCCGTTCTTACCAAGGTTAGGCATAGGCATTTAGTTGCTCTTTTAGGGTACTGCATTAATGGAAATGAGAGAATTTTGGTTTATGAGTACATGCCTCAAGGGACCTTGACTCAACATTTGTTTGATTGGGCTGAGAATGGATACGCACCTCTTACTTGGAGGCAGAGGATTATTATTGCATTGGATGTAGGTAGAGGGGTCGAGTACCTGCATAGTTTAGCTCAACAGAGTTTCATTCACAGAGATTTGAAGCCTTCGAATATTCTTCTTGGTGATGATATGAGAGCTAAAGTTGCTGATTTTGGATTGGTTAAACACGCGCCTGATGGGAAATACTCTTTAGAGACCAAGCTGGCTGGAACATTTGGATACCTTGCTCCTGAATATGCCGCAACCGGAAGAGTGACTACAAAAGTTGACGTTTATGCATTTGGAGTGATCTTGATGGAGCTAATCACGGGCCGTAAGGCATTAGACGACACAGTCCCACACGAGAGGGCTCAACTAGTGACATGGTTTCGTCGGGTTTTGACCAACAAGGAAAACATTCCAAAGGCTATTGATGAAACTCTCAAGCCCGACAAAGAAACCCTTGAGAGCATATGCAAGGTTGCTGAGCTGGCAGGTTATTGCACCGCTCGGGAACCCTACCAGAGACCCGATATGGGTCATGCAGTTAACATCTTGGGTCCCCTTGTTGATCAATGGAAACCTACTAGCCAAGAAGAGGAAGAAAACTATGCTATCAACATGCATATGAGCCTTCCTCAAGCTCTTCAAAGATGGCAAGCTAGTGAAGAAGGTACTTCCACCATGTTTAATGACGATTCCTTCTTTCAAACTCATTCAAGCATCCCTTCAAAACCTTCCGGTTTTACGGAGTCGTTAGACTCAACGGATTGTCGTTGA 2784 44.86 MGRLRSSSLSRSTLIILSLLTILSAVAADDADIMAKLAAALAPKPSDWKSTATNGGYCKWSGITCDSSNRVISLKLDSQSLSGTLPADLNSLSQLTSLALQKNSLSGPLPSLSNLSSLQTLYLDNNNFTLIPSNCFQGLTSLQTLSLTQNLNLAPWTIPTVLTHSASLETLYIGNANVFGPIPDFFDSFTSLQALRLSYNNLTGPLPPSLARSNIQNLWLNNQLIGLSGSIGVLSSMTQLSQVWLQKNLFTGQIPDLSKCENLFDLQLRDNQITGIVPQSLIQLSSLQNVSLANNKLQGPLPVFGSKVTAIVDGTNSFCKTTTGPCDAQVTTLLEVAGSFGYPVSLADSWTGNSACKWSFITCLNNSVSSINMGKQRLEGTISPSFANLTSLKNLRLNDNNLTGSIPDSLTTLPLLAVLDVSNNNLSGIVPKFSSTVQLTTSGNPLLGTVLSPGSGDNSNTNGSSKGQSGSSSVSSVSPGMIAGVVISVIVFVAVMLFVVFKCYVKNRNKKHWVVKNLKKNEKENIRSKIQSTTVKSNEGVPSELHSQTSGDHGNINVFEGGNVTISIQVLKEVTNDFSEHNILGRGGFGVVYKGELHDGTKIAVKRMESMAASTKGLNEFQAEIAVLTKVRHRHLVALLGYCINGNERILVYEYMPQGTLTQHLFDWAENGYAPLTWRQRIIIALDVGRGVEYLHSLAQQSFIHRDLKPSNILLGDDMRAKVADFGLVKHAPDGKYSLETKLAGTFGYLAPEYAATGRVTTKVDVYAFGVILMELITGRKALDDTVPHERAQLVTWFRRVLTNKENIPKAIDETLKPDKETLESICKVAELAGYCTAREPYQRPDMGHAVNILGPLVDQWKPTSQEEEENYAINMHMSLPQALQRWQASEEGTSTMFNDDSFFQTHSSIPSKPSGFTESLDSTDCR 927
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 6407345 6410464 - Conep18aG0092900.1 Cone18ag0903 457864

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone18ag0903 927 SMART serkin_6 578 862 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone18ag0903 927 Gene3D Ribonuclease Inhibitor 28 326 IPR032675 -
Cone18ag0903 927 FunFam Leucine-rich repeat receptor-like kinase 328 450 - -
Cone18ag0903 927 FunFam receptor protein kinase TMK1 656 873 - -
Cone18ag0903 927 ProSitePatterns Serine/Threonine protein kinases active-site signature. 703 715 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone18ag0903 927 ProSiteProfiles Protein kinase domain profile. 578 858 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone18ag0903 927 PANTHER OSJNBA0070M12.3 PROTEIN 14 927 IPR052422 -
Cone18ag0903 927 Gene3D Phosphorylase Kinase; domain 1 541 655 - -
Cone18ag0903 927 SMART LRR_typ_2 189 213 IPR003591 -
Cone18ag0903 927 SMART LRR_typ_2 115 138 IPR003591 -
Cone18ag0903 927 SMART LRR_typ_2 389 412 IPR003591 -
Cone18ag0903 927 SMART LRR_typ_2 413 435 IPR003591 -
Cone18ag0903 927 Gene3D Ribonuclease Inhibitor 327 450 IPR032675 -
Cone18ag0903 927 Gene3D Transferase(Phosphotransferase) domain 1 656 881 - -
Cone18ag0903 927 SUPERFAMILY L domain-like 57 446 - -
Cone18ag0903 927 Pfam Protein kinase domain 579 851 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone18ag0903 927 Pfam Leucine Rich Repeat 391 413 IPR001611 GO:0005515(InterPro)
Cone18ag0903 927 Pfam Leucine Rich Repeat 191 211 IPR001611 GO:0005515(InterPro)
Cone18ag0903 927 ProSiteProfiles Leucine-rich repeat profile. 117 138 IPR001611 GO:0005515(InterPro)
Cone18ag0903 927 SUPERFAMILY Protein kinase-like (PK-like) 567 879 IPR011009 -
Cone18ag0903 927 Pfam Leucine rich repeat 94 150 IPR001611 GO:0005515(InterPro)
Cone18ag0903 927 CDD STKc_IRAK 584 857 - -
Cone18ag0903 927 FunFam Receptor-like kinase TMK4 28 324 - -
Cone18ag0903 927 MobiDBLite consensus disorder prediction 449 474 - -
Cone18ag0903 927 Pfam Leucine rich repeat N-terminal domain 327 363 IPR013210 -
Cone18ag0903 927 Pfam Leucine rich repeat N-terminal domain 28 66 IPR013210 -
Cone18ag0903 927 MobiDBLite consensus disorder prediction 898 927 - -
Cone18ag0903 927 ProSitePatterns Protein kinases ATP-binding region signature. 584 606 IPR017441 GO:0005524(InterPro)
Cone18ag0903 927 FunFam receptor protein kinase TMK1 540 655 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone18ag0903 K00924 - - csv:101213513 1214.91
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0538 Cone-Chr14:2684562 Cone18ag0903 Cone-Chr18:6407345 0 dispersed
Cone15ag0562 Cone-Chr15:2821303 Cone18ag0903 Cone-Chr18:6407345 5.29e-318 dispersed
Cone18ag0903 Cone-Chr18:6407345 Cone9ag0377 Cone-Chr9:1697380 1.36E-209 dispersed
Cone11ag0607 Cone-Chr11:3750247 Cone18ag0903 Cone-Chr18:6407345 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1059 . Blo12g00158 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag0538 Cone15ag0562 Cone18ag0903 . . . . . . Blo07g00197 . . . . . Bma06g01485 . . . Cma08g00873 . . . . . Bhi12g02115 . . . . . Lcy13g0883 . . . . . . . Lsi09g01615 . . Cme11g02213
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82332 PF03171 2OG-FeII_Oxy 2.30E-05 CL0029 Cone PK