Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone18ag0904 ATGGAACAACCCCACGTTCTCCTTGTAACATTCCCATCTCAAGGCCACATAAACCCGGCCATCCAATTAGCCAAGCGCCTAGTCCGCCTCAATACCTACGTCACACTTGCCACTACCGTGTCCGCTCACCGCCACATTACCCAAACCACCTCTGTCCCAGGCATATCCTTTGCCGCATTTTCCGGCGGCTACGACGATAGTTTCAAACTGGGAGATGAAATGGGTCACTACATGTCCGAGTTAGAGCGTCTTGGCTCAGAGAATCTAAAAGAATTGATTGTGTCAAGAACCAGAGAAAAAGGTTGCTCTTTCACTTGCATAGTCTATTCTATACTTATCCCTTGGGTACATCAAGTGGCGCGTGAAGTTCACCTCCCATCTGCTCTTCTTTGGACCCAACCCGCCACTATTTTTGACATATATTATTATTACTTTTACCGGTATGGAGATGCGGTTAGGGACAGTATCCATGACCCCACATGGTCCATTGAGTTGCCTGGCTTGCCTTCGTTGTCTAGCCGCGACCTTCCTTCGTTTTTCTCAGCTCCTAATATTGTTCACTCCTTTGCACTCCCTTTGTTTCGTAGGCATTTTGAAGTACTACTTGAGGAAGAAAGTGAAAGAAAGCCTAATATCTTAGTGAACACCTTTGATGCTTTAGAGCATAATGCTCTTAAGGTCCGTGATAAGTTCAACTTGATTCCTATTGGACCATTGGTTCCATCCACTTTTCTTGACGGAAAGGACCCAAATGATAAGTCTTTTGGGGTTGATTTGATTTCCCTTGAATCGAATGATTACCTAGAATGGTTGAACTCAAAGCCGGAGTCGTCTGTCATTTATGTCGCATTTGGAAGCATGTCCACGCCATCAAAGGCACAAATGGAGGAAATTGCACGCGGATTGTTAGATACGGGCCGTCCGTTTTTGTGGGTTATAAGAAAGAAAGAAAACGGAGATCAAGGGAGAGGTGGAGGGGAAGGAGATGTATTGAGTTGTCAGGAGGAAGTGGAACAGCAAGGAAAAATAGTGTCGTGGTGTTCTCAAGTAGAGGTCTTGTCGAATCTTTCATTGGGTTGTTTCGTGACGCATTGCGGCTGGAATTCTTCATTGGAGAGTTTGGTCTCGGGTGTTCCGGTCGTGGCGTTTCCTCAATGGACAGATCAAGGGACAAATGCGAAGCTAATGCAAGATGTGTGGAAGACTGGAGTTAGGGTTAATGGAAATGGGGAAGGGTTAGTTGAAGGAAATGAAATTAAGAGGTGTGTGGAACTGGTTATGGGAGAGGGAGAGAGAGGAGAGGAAGTGAGGAGGAATGCCAAGAAATGGAAGGAGTTGGCTAAGGAGGCTGCTATTGAAAGTGGACCGCTGGATAAGAATATTAAGACATTTGTGGATGATATTGTAAGAAGATCATAA 1419 45.38 MEQPHVLLVTFPSQGHINPAIQLAKRLVRLNTYVTLATTVSAHRHITQTTSVPGISFAAFSGGYDDSFKLGDEMGHYMSELERLGSENLKELIVSRTREKGCSFTCIVYSILIPWVHQVAREVHLPSALLWTQPATIFDIYYYYFYRYGDAVRDSIHDPTWSIELPGLPSLSSRDLPSFFSAPNIVHSFALPLFRRHFEVLLEEESERKPNILVNTFDALEHNALKVRDKFNLIPIGPLVPSTFLDGKDPNDKSFGVDLISLESNDYLEWLNSKPESSVIYVAFGSMSTPSKAQMEEIARGLLDTGRPFLWVIRKKENGDQGRGGGEGDVLSCQEEVEQQGKIVSWCSQVEVLSNLSLGCFVTHCGWNSSLESLVSGVPVVAFPQWTDQGTNAKLMQDVWKTGVRVNGNGEGLVEGNEIKRCVELVMGEGERGEEVRRNAKKWKELAKEAAIESGPLDKNIKTFVDDIVRRS 472
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 6420828 6422246 - Conep18aG0093000.1 Cone18ag0904 457865

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone18ag0904 472 Gene3D Glycogen Phosphorylase B; 9 461 - -
Cone18ag0904 472 ProSitePatterns UDP-glycosyltransferases signature. 346 389 IPR035595 -
Cone18ag0904 472 Pfam UDP-glucoronosyl and UDP-glucosyl transferase 266 407 IPR002213 GO:0008194(InterPro)
Cone18ag0904 472 FunFam Glycosyltransferase 254 449 - -
Cone18ag0904 472 CDD GT1_Gtf-like 4 451 IPR002213 GO:0008194(InterPro)
Cone18ag0904 472 PANTHER GLUCOSYL/GLUCURONOSYL TRANSFERASES 5 449 - GO:0080043(PANTHER)|GO:0080044(PANTHER)
Cone18ag0904 472 Gene3D Glycogen Phosphorylase B; 254 449 - -
Cone18ag0904 472 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 1 470 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone18ag0904 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0602 Cone-Chr11:3697507 Cone18ag0904 Cone-Chr18:6420828 3.65E-264 dispersed
Cone11ag0603 Cone-Chr11:3712780 Cone18ag0904 Cone-Chr18:6420828 4.57e-316 dispersed
Cone18ag0904 Cone-Chr18:6420828 Cone18ag0906 Cone-Chr18:6438413 1.29E-202 dispersed
Cone18ag0904 Cone-Chr18:6420828 Cone18ag0905 Cone-Chr18:6425351 2.73E-302 tandem
Cone11ag0601 Cone-Chr11:3681139 Cone18ag0904 Cone-Chr18:6420828 8.80E-198 wgd
Cone14ag0540 Cone-Chr14:2692900 Cone18ag0904 Cone-Chr18:6420828 2.37E-156 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1056 . . . . . . . . Cmo08g00839 . . . . . . . . . . . . . . . . . . . . . . Cone14ag0540 Cone15ag0563 Cone18ag0904 . . . . . Blo02g00397 . . . . . . . . . . Cma08g00869 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002292 1 2 2 2 2 2 0 2 2 1 2 2 2 1 2 4 2 8 2 2 1 3 1 1 1 2 1 1 1 8 63