Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone18ag0909 ATGCAGAATGGTTTCCCAGATTCCGGTGCAAAACGGTTTTTACTCCCAGCTTCTGATTGTGAATACTCTCTCAATTCGCTATTGGATGAATTGCAAACGGATCAGTGGCCTGTTCCACCAGGTAATAGGGCTTCTAGGTGCACTGGAGTGGCATTGAGTGTTGCAGTAGGGTTGCTTGGTGCATTTTTACCTGGAACCGGGGCCCGGATTGTAGCTTTTGTTGGTGGTCCATGCACAGAAGGGCCTGGCATGATTGTATCGAAAGATCTATCAGAGCCGGTGCGCTCTCATAAGGATCTTGATAAGGATGCTGCCCCTTACTTTAAAAAAGCAGTCAAATTTTACGAAACTATGTCAAAACAGCTCGTTAGCCAAGGTCACGTCTTGGACCTTTTTGCATCCGCACTTGATCAGGTTGGTGTTGCAGAAATGAAAGTTGTGGTGGAAAAAACAGGTGGCCTTGTTGTTCTAGCTGAAAGTTTTTCCCATTCTGTATTTAAGGACTCCTTCAAGCGTATATTTGAAGAGGGAGAACAGTCGCTTGGCCTTTGCTTTAATGGCACTCTAGAGGTCAATTGTTCGAAGGACATAAAAATTCAGGGGATAATTGGACCTTGCTCGTCTTTGGAGAAGAACGGTCCTTCTGTTGCTGATACCACCATTGGGGAGGGCAATACAACCGCCTGGAAGATGTGTGGCCTAGACAAGAGCACTTGCTTGACTTTGTTTTTTGATCTTTCATCAAGTGACAAATCAAATATTTCCGGACCTCCGAATCCACAACTGTACTTGCAATTTCTTACAAGTTTTCAAAACACCGAAGGTCAATTAATGCTCCGAGTCACAACTGTGACTAGAAGATGGATAGATACTGCTGTTAACTTGGAGGACTTGGTACAAGGATTTGATCAAGAGACAGCTGCTGTTGCAATGGCAAGATTGGCTTCACTGAAAATGGAGATGGAGGAGGGTTTTGATGCCACCCGCTGGTTGGATCGCTCCCTAATTCGTCTCTGCTCCAAATTTGGGGACTACCGAAAAGATGATCCATCATCCTTTACCTTAAACCCTTGTTTTTCATTGTTTCCTCAATTTCTGTTTAATTTGCGGCGATCACAATTTTTGCAGGTCTTTAACAACAGTCCAGATGAAACTGCTTATTTCCGCATGTTGTTAAATCGGGAAAATATATCCAATGCAGCTGTGATGATTCAACCGTCTCTGATCTCGTTTTCATTCAGTTCACTTCCTGTTCCAGCATTGTTAGATGTCACTTCCATTGGAGCTGACAAGATTCTCCTGCTAGATTCTTATTTCAGCATTGTCATATTCCATGGACTGACCATAGCTCAGTGGCGTAACATGGGATACCAGAACCAGCCAGAGCACCAGGCATTTGCGCAACTATTACAAGCTCCTCAGGATGAGGCTAAAATTATCATTCACAATCGTTTTCCTGTCCCTCGGTTAGTGGTGTGTGATCAACATGGCTCGCAGGCTAGATTCTTGTTGGCAAAGTTGAATCCTTCTGCTACATACAACAATGCTCATGAGATGGGTGCTGGATCTGATGTCATCTTCACTGATGATGTTAGCCTTCAAGTCTTTTTCGAGCATCTCCAAAGGCTGGCTGCGCAATCTTAA 1644 44.1 MQNGFPDSGAKRFLLPASDCEYSLNSLLDELQTDQWPVPPGNRASRCTGVALSVAVGLLGAFLPGTGARIVAFVGGPCTEGPGMIVSKDLSEPVRSHKDLDKDAAPYFKKAVKFYETMSKQLVSQGHVLDLFASALDQVGVAEMKVVVEKTGGLVVLAESFSHSVFKDSFKRIFEEGEQSLGLCFNGTLEVNCSKDIKIQGIIGPCSSLEKNGPSVADTTIGEGNTTAWKMCGLDKSTCLTLFFDLSSSDKSNISGPPNPQLYLQFLTSFQNTEGQLMLRVTTVTRRWIDTAVNLEDLVQGFDQETAAVAMARLASLKMEMEEGFDATRWLDRSLIRLCSKFGDYRKDDPSSFTLNPCFSLFPQFLFNLRRSQFLQVFNNSPDETAYFRMLLNRENISNAAVMIQPSLISFSFSSLPVPALLDVTSIGADKILLLDSYFSIVIFHGLTIAQWRNMGYQNQPEHQAFAQLLQAPQDEAKIIIHNRFPVPRLVVCDQHGSQARFLLAKLNPSATYNNAHEMGAGSDVIFTDDVSLQVFFEHLQRLAAQS 547
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 6462875 6468528 - Conep18aG0093600.1 Cone18ag0909 457870

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone18ag0909 547 Gene3D von Willebrand factor, type A domain 2 178 IPR036465 -
Cone18ag0909 547 SUPERFAMILY Helical domain of Sec23/24 303 405 IPR036175 GO:0006886(InterPro)|GO:0006888(InterPro)|GO:0030127(InterPro)
Cone18ag0909 547 Gene3D Sec23/Sec24 helical domain 300 544 - -
Cone18ag0909 547 Pfam Sec23/Sec24 helical domain 303 400 IPR006900 GO:0006886(InterPro)|GO:0006888(InterPro)|GO:0030127(InterPro)
Cone18ag0909 547 FunFam Protein transport protein SEC23 300 417 - -
Cone18ag0909 547 Pfam Sec23/Sec24 trunk domain 9 174 IPR006896 GO:0006886(InterPro)|GO:0006888(InterPro)|GO:0030127(InterPro)
Cone18ag0909 547 SUPERFAMILY vWA-like 11 175 IPR036465 -
Cone18ag0909 547 Pfam Sec23/Sec24 beta-sandwich domain 185 288 IPR012990 -
Cone18ag0909 547 Gene3D Severin 405 509 IPR029006 -
Cone18ag0909 547 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 406 545 IPR036180 -
Cone18ag0909 547 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 9 546 IPR037364 GO:0005096(PANTHER)|GO:0030127(PANTHER)|GO:0070971(PANTHER)|GO:0090110(PANTHER)
Cone18ag0909 547 FunFam Protein transport protein SEC23 405 509 - -
Cone18ag0909 547 Gene3D - 179 289 - -
Cone18ag0909 547 Pfam Gelsolin repeat 415 503 IPR007123 -
Cone18ag0909 547 SUPERFAMILY beta-sandwich domain of Sec23/24 186 302 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone18ag0909 K14006 - - csv:101209792 966.452
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0596 Cone-Chr11:3650720 Cone18ag0909 Cone-Chr18:6462875 0 wgd
Cone15ag0568 Cone-Chr15:2851889 Cone18ag0909 Cone-Chr18:6462875 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1024 . . . . . . . . Cmo08g00949 . Cma06g01605 . Car06g01364 . Sed02g1076 Cpe08g00118 . Bhi01g01171 Tan10g1175 Cmetu06g0798 . Hepe05g1311 . Lcy11g1275 . . . . . . . Cone14ag0547 Cone15ag0568 Cone18ag0909 Cone11ag0596 . . . Cme06g00863 . Blo07g00065 . Bda13g00305 . . . . . . . Cma08g00981 . Car08g00861 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004546 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 1 1 42