Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone18ag0913 ATGGAAAGGGAGAGGTTCTTAACAAATGATATGAACTGGAACTACTCAAATTTCGGGATGGAAATCCAGTCGAATGATTTTAACAACAACAATTCCTGCATTTTCAATCCGAAATGGGATAATTCAATGGATCAGAGCGATCCCTTTGAATCCGCCGTAAGCTCCATAGTCTCCTCTCCAGCTGCTTCCAATGGAGGCGGCGGACCCACCACAACCACCCCCATCACCGGAGACAGCATAATGATCAGAGAACTCATCGGAAGACTAGGAAGCATTTGCAATTCCGGTGAGATTTCCCCTCAACCTTACATTCCAGGAAATAATAGCACTAACACTTCATGCTATAACACCCCATTAAATTCACCACCTAAGCTCAACCTATCGATGATGGATCCACAAATGAGACCAAACCTTCCACTTTCTGGGACCCACTTGGCCCCTTTTCCGGCCGATCCTGGTTTCGCAGAGAGAGCGGCAAGATTTTCCTGTTTTGGGACAAGAAATGTTGGACAATTTAGTCTGGTTGAAACTGAGTTGGGTTGTTGTAACAACAGATCAATGCCTAAATCCGAATCGGGCAAGCTGTCGAGGGTTTCTAGTAATCAGTCGTTTAAATTTGCTACCGGTTCTGGATCCCAAATGGGTAATTTAGAAAGCAATGCAAAGGGTGAGGAAAATGGAGTAGAATTGAATGATTCAAGGGAAGGTTCCTCTGTTTCTGAGCAGGTCACTTTTGGTGAATTGAATATCAAAACTGAACCTGTTCCTCCTGCTGCTGCTTGTAATAACAGGAAGAGGAAATCTATTACAAAGGGGAAGGGTAAAGAAGCTGCAACAAATCCTAAAGATGTTAAGGCAGGGGTAGAGAGTGATGAGTTGAAGGCGAAGAGGAGCAAACAGGAGGCGGAAAATGGGACTGAAAAGGGCAGTGAAAAGGGAGAGGAGTGTTGTGATGGTGAGAATAAAAATGGAGGGGAAGGGAATGACAATCAGAAGACTTGTAATTATAAGGATAATTTGAAGCCGCCTGAGCCTCCCAAGGATTATATTCATGTTCGGGCCAGAAGGGGTCAGGCGACAGATAGCCATAGTTTGGCTGAAAGAGTTCGAAGAGAGAAGATTAGCGAAAGGATGAAGTTTCTTCAAGATCTGGTTCCTGGTTGCAATAAGGTAATTGGGAAGGCAGTGATGCTTGATGAAATTATAAACTATGTGCAGTCATTACAGCGCCAAGTTGAGTTTCTATCAATGAAATTGGCTACTGTTAATCCAAGGATGGATTTTAACATGGAGACTCTTCTTCCAAAAGAGGTCTTTCAAACTCGTGGATCTTTACCGCAAACTATGTACCCCTTAGATTCGTCTATGCCCGGCTTTTCAAACAACTACCAGGCCCTGCAATTGCCTTCTCCACAACTACACAATAATGGAATTTCTACTGGAAATGAGAATCAATTCTCTGTAAATCCGGCAATGAGTGGTACTCTAAGACGGAACTTAAGTACGCACGGCCCTCCTCCCGTTGATGGATTTGCCGAAGCTGTTCCTTCCCAAGTTTCATCCTTCTGGGAAGATGATCTTCAAAGTGTAGTTCAGATGGGTTATGGACAGAATTAG 1617 43.78 MERERFLTNDMNWNYSNFGMEIQSNDFNNNNSCIFNPKWDNSMDQSDPFESAVSSIVSSPAASNGGGGPTTTTPITGDSIMIRELIGRLGSICNSGEISPQPYIPGNNSTNTSCYNTPLNSPPKLNLSMMDPQMRPNLPLSGTHLAPFPADPGFAERAARFSCFGTRNVGQFSLVETELGCCNNRSMPKSESGKLSRVSSNQSFKFATGSGSQMGNLESNAKGEENGVELNDSREGSSVSEQVTFGELNIKTEPVPPAAACNNRKRKSITKGKGKEAATNPKDVKAGVESDELKAKRSKQEAENGTEKGSEKGEECCDGENKNGGEGNDNQKTCNYKDNLKPPEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKFLQDLVPGCNKVIGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRMDFNMETLLPKEVFQTRGSLPQTMYPLDSSMPGFSNNYQALQLPSPQLHNNGISTGNENQFSVNPAMSGTLRRNLSTHGPPPVDGFAEAVPSQVSSFWEDDLQSVVQMGYGQN 538
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 6505353 6507945 - Conep18aG0094000.1 Cone18ag0913 457874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone18ag0913 538 MobiDBLite consensus disorder prediction 55 76 - -
Cone18ag0913 538 MobiDBLite consensus disorder prediction 272 322 - -
Cone18ag0913 538 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 356 428 IPR036638 GO:0046983(InterPro)
Cone18ag0913 538 Pfam Helix-loop-helix DNA-binding domain 362 409 IPR011598 GO:0046983(InterPro)
Cone18ag0913 538 FunFam Basic helix-loop-helix transcription factor 355 428 - -
Cone18ag0913 538 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 146 482 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Cone18ag0913 538 SMART finulus 364 414 IPR011598 GO:0046983(InterPro)
Cone18ag0913 538 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 358 408 IPR011598 GO:0046983(InterPro)
Cone18ag0913 538 MobiDBLite consensus disorder prediction 232 247 - -
Cone18ag0913 538 MobiDBLite consensus disorder prediction 205 220 - -
Cone18ag0913 538 MobiDBLite consensus disorder prediction 205 348 - -
Cone18ag0913 538 Gene3D - 355 429 IPR036638 GO:0046983(InterPro)
Cone18ag0913 538 CDD bHLH_AtBPE_like 348 433 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0099 Cone-Chr13:612715 Cone18ag0913 Cone-Chr18:6505353 1.08E-42 dispersed
Cone13ag0303 Cone-Chr13:2373843 Cone18ag0913 Cone-Chr18:6505353 2.68E-33 dispersed
Cone13ag0883 Cone-Chr13:7839782 Cone18ag0913 Cone-Chr18:6505353 6.01E-54 dispersed
Cone17ag0663 Cone-Chr17:4075955 Cone18ag0913 Cone-Chr18:6505353 1.12E-70 dispersed
Cone18ag0913 Cone-Chr18:6505353 Cone20ag0732 Cone-Chr20:5014150 5.20E-62 dispersed
Cone11ag0593 Cone-Chr11:3602668 Cone18ag0913 Cone-Chr18:6505353 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45198 PF12796 Ank_2 2.80E-15 CL0465 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone18ag0913 - - - 0.0