Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone18ag0913 | ATGGAAAGGGAGAGGTTCTTAACAAATGATATGAACTGGAACTACTCAAATTTCGGGATGGAAATCCAGTCGAATGATTTTAACAACAACAATTCCTGCATTTTCAATCCGAAATGGGATAATTCAATGGATCAGAGCGATCCCTTTGAATCCGCCGTAAGCTCCATAGTCTCCTCTCCAGCTGCTTCCAATGGAGGCGGCGGACCCACCACAACCACCCCCATCACCGGAGACAGCATAATGATCAGAGAACTCATCGGAAGACTAGGAAGCATTTGCAATTCCGGTGAGATTTCCCCTCAACCTTACATTCCAGGAAATAATAGCACTAACACTTCATGCTATAACACCCCATTAAATTCACCACCTAAGCTCAACCTATCGATGATGGATCCACAAATGAGACCAAACCTTCCACTTTCTGGGACCCACTTGGCCCCTTTTCCGGCCGATCCTGGTTTCGCAGAGAGAGCGGCAAGATTTTCCTGTTTTGGGACAAGAAATGTTGGACAATTTAGTCTGGTTGAAACTGAGTTGGGTTGTTGTAACAACAGATCAATGCCTAAATCCGAATCGGGCAAGCTGTCGAGGGTTTCTAGTAATCAGTCGTTTAAATTTGCTACCGGTTCTGGATCCCAAATGGGTAATTTAGAAAGCAATGCAAAGGGTGAGGAAAATGGAGTAGAATTGAATGATTCAAGGGAAGGTTCCTCTGTTTCTGAGCAGGTCACTTTTGGTGAATTGAATATCAAAACTGAACCTGTTCCTCCTGCTGCTGCTTGTAATAACAGGAAGAGGAAATCTATTACAAAGGGGAAGGGTAAAGAAGCTGCAACAAATCCTAAAGATGTTAAGGCAGGGGTAGAGAGTGATGAGTTGAAGGCGAAGAGGAGCAAACAGGAGGCGGAAAATGGGACTGAAAAGGGCAGTGAAAAGGGAGAGGAGTGTTGTGATGGTGAGAATAAAAATGGAGGGGAAGGGAATGACAATCAGAAGACTTGTAATTATAAGGATAATTTGAAGCCGCCTGAGCCTCCCAAGGATTATATTCATGTTCGGGCCAGAAGGGGTCAGGCGACAGATAGCCATAGTTTGGCTGAAAGAGTTCGAAGAGAGAAGATTAGCGAAAGGATGAAGTTTCTTCAAGATCTGGTTCCTGGTTGCAATAAGGTAATTGGGAAGGCAGTGATGCTTGATGAAATTATAAACTATGTGCAGTCATTACAGCGCCAAGTTGAGTTTCTATCAATGAAATTGGCTACTGTTAATCCAAGGATGGATTTTAACATGGAGACTCTTCTTCCAAAAGAGGTCTTTCAAACTCGTGGATCTTTACCGCAAACTATGTACCCCTTAGATTCGTCTATGCCCGGCTTTTCAAACAACTACCAGGCCCTGCAATTGCCTTCTCCACAACTACACAATAATGGAATTTCTACTGGAAATGAGAATCAATTCTCTGTAAATCCGGCAATGAGTGGTACTCTAAGACGGAACTTAAGTACGCACGGCCCTCCTCCCGTTGATGGATTTGCCGAAGCTGTTCCTTCCCAAGTTTCATCCTTCTGGGAAGATGATCTTCAAAGTGTAGTTCAGATGGGTTATGGACAGAATTAG | 1617 | 43.78 | MERERFLTNDMNWNYSNFGMEIQSNDFNNNNSCIFNPKWDNSMDQSDPFESAVSSIVSSPAASNGGGGPTTTTPITGDSIMIRELIGRLGSICNSGEISPQPYIPGNNSTNTSCYNTPLNSPPKLNLSMMDPQMRPNLPLSGTHLAPFPADPGFAERAARFSCFGTRNVGQFSLVETELGCCNNRSMPKSESGKLSRVSSNQSFKFATGSGSQMGNLESNAKGEENGVELNDSREGSSVSEQVTFGELNIKTEPVPPAAACNNRKRKSITKGKGKEAATNPKDVKAGVESDELKAKRSKQEAENGTEKGSEKGEECCDGENKNGGEGNDNQKTCNYKDNLKPPEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKFLQDLVPGCNKVIGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRMDFNMETLLPKEVFQTRGSLPQTMYPLDSSMPGFSNNYQALQLPSPQLHNNGISTGNENQFSVNPAMSGTLRRNLSTHGPPPVDGFAEAVPSQVSSFWEDDLQSVVQMGYGQN | 538 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
18 | 6505353 | 6507945 | - | Conep18aG0094000.1 | Cone18ag0913 | 457874 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone18ag0913 | 538 | MobiDBLite | consensus disorder prediction | 55 | 76 | - | - | |
Cone18ag0913 | 538 | MobiDBLite | consensus disorder prediction | 272 | 322 | - | - | |
Cone18ag0913 | 538 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 356 | 428 | IPR036638 | GO:0046983(InterPro) | |
Cone18ag0913 | 538 | Pfam | Helix-loop-helix DNA-binding domain | 362 | 409 | IPR011598 | GO:0046983(InterPro) | |
Cone18ag0913 | 538 | FunFam | Basic helix-loop-helix transcription factor | 355 | 428 | - | - | |
Cone18ag0913 | 538 | PANTHER | STEROL REGULATORY ELEMENT-BINDING PROTEIN | 146 | 482 | IPR024097 | GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro) | |
Cone18ag0913 | 538 | SMART | finulus | 364 | 414 | IPR011598 | GO:0046983(InterPro) | |
Cone18ag0913 | 538 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 358 | 408 | IPR011598 | GO:0046983(InterPro) | |
Cone18ag0913 | 538 | MobiDBLite | consensus disorder prediction | 232 | 247 | - | - | |
Cone18ag0913 | 538 | MobiDBLite | consensus disorder prediction | 205 | 220 | - | - | |
Cone18ag0913 | 538 | MobiDBLite | consensus disorder prediction | 205 | 348 | - | - | |
Cone18ag0913 | 538 | Gene3D | - | 355 | 429 | IPR036638 | GO:0046983(InterPro) | |
Cone18ag0913 | 538 | CDD | bHLH_AtBPE_like | 348 | 433 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone13ag0099 | Cone-Chr13:612715 | Cone18ag0913 | Cone-Chr18:6505353 | 1.08E-42 | dispersed | |
Cone13ag0303 | Cone-Chr13:2373843 | Cone18ag0913 | Cone-Chr18:6505353 | 2.68E-33 | dispersed | |
Cone13ag0883 | Cone-Chr13:7839782 | Cone18ag0913 | Cone-Chr18:6505353 | 6.01E-54 | dispersed | |
Cone17ag0663 | Cone-Chr17:4075955 | Cone18ag0913 | Cone-Chr18:6505353 | 1.12E-70 | dispersed | |
Cone18ag0913 | Cone-Chr18:6505353 | Cone20ag0732 | Cone-Chr20:5014150 | 5.20E-62 | dispersed | |
Cone11ag0593 | Cone-Chr11:3602668 | Cone18ag0913 | Cone-Chr18:6505353 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
45198 | PF12796 | Ank_2 | 2.80E-15 | CL0465 | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone18ag0913 | - | - | - | 0.0 |