Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone18ag0915 ATGGCGGCAAATTCTTCGAATCCAGGTTTCGAGCCGTTTTGTCTGTTCTCGTCAGAGGAAGACAAGAAAGGGAATCCAGGCCTAGGTTTAGGGTTTTTCGATGATCCTCAGGAATCGCTTCCACCTCCTCCTCCTTCCATCGAAGTTCTTTCTTCTGAGACTGCTTCTTCTGCGAAACACAATTTGGAGGTAGTAAACTTTGGTGAACTTACATTACTTAAGGGGCGAGTTAGCACTCGAGAACTGTTTTCTTTGTCCAACTCTGATCTAGTCCCTGGGAAATATGAAGGGGGGTTAAAGTTATGGGAAGGCTCATTGGATCTTGTTAGAGCCCTTCAGTCAGAGATTCGGAATGGCCATTTATCTTTTACTGGGAAGCGAGTTTTGGAGCTTGGATGTGGTCATGGACTTCCTGGAATCTTTGCATGCCTTGAGGGTGCAGCTGCTGTACATTTCCAGGATTTCAATGCTGAAGTTCTAAAATGTCTTACCATTCCCAATGTTAGTGCCAATATCTCAAACAAGTATAAATCCTTGTCAATCGACACAGGAGGTGGTACTAGACCAGAAGCTCGTTTCTTTTCTGGTGACTGGAGTGAGGTACATAAAATTCTTCCTCATGTAGTAGACTCTAGGAAGGAGCCAAATGGGGACTTTGATCAAACCGACGGTGCTGGCTATGATGTTATATTAATGGCAGAGACAGTATATTCTGTGTCTGCTCTTCAAAATCTCTATGAACTTACCAAGAAGTGCTTGAGGCGTCCTCATGGAGTTGTCTATGTAGCTGGCAAGAAGCATTACTTTGGAGTAGGTGGAGGAACACGGCGATTTCTTTCTGTTGTAGATAAAGATGGCATAATGTCTTACAAGCTGACCAGTGAAGTTGCTGATGGTGCATCTAATGTCCGTGAGGTAATGAAGCTTTCGTTTAAGTAG 939 43.88 MAANSSNPGFEPFCLFSSEEDKKGNPGLGLGFFDDPQESLPPPPPSIEVLSSETASSAKHNLEVVNFGELTLLKGRVSTRELFSLSNSDLVPGKYEGGLKLWEGSLDLVRALQSEIRNGHLSFTGKRVLELGCGHGLPGIFACLEGAAAVHFQDFNAEVLKCLTIPNVSANISNKYKSLSIDTGGGTRPEARFFSGDWSEVHKILPHVVDSRKEPNGDFDQTDGAGYDVILMAETVYSVSALQNLYELTKKCLRRPHGVVYVAGKKHYFGVGGGTRRFLSVVDKDGIMSYKLTSEVADGASNVREVMKLSFK 312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 6537423 6540670 - Conep18aG0094200.1 Cone18ag0915 457876

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone18ag0915 312 Gene3D Vaccinia Virus protein VP39 86 309 IPR029063 -
Cone18ag0915 312 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 94 264 IPR029063 -
Cone18ag0915 312 MobiDBLite consensus disorder prediction 1 43 - -
Cone18ag0915 312 PANTHER HEPATOCELLULAR CARCINOMA-ASSOCIATED ANTIGEN 66 284 IPR019410 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone18ag0915 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone18ag0878 Cone-Chr18:6185856 Cone18ag0915 Cone-Chr18:6537423 1.09E-60 dispersed
Cone11ag0615 Cone-Chr11:3835545 Cone18ag0915 Cone-Chr18:6537423 2.02E-64 wgd
Cone11ag0592 Cone-Chr11:3569048 Cone18ag0915 Cone-Chr18:6537423 8.47E-121 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1022 . . . . . . . . . . Cma06g01659 . Car06g01402 Car14g01361 . . . . . . . . . . . . . . . . . . . Cone18ag0915 Cone11ag0592 . . . . . Blo07g00063 . . . . . Bma06g01395 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006894 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 3 2 37