Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone18ag0928 ATGGCTCCTTTTTACTCAGTTTTCTTCACTATTCTCCTACCTCTTTCCTCTCTGTTCCTCAACCCATGCTTTTGCTTCCATCCCAAGCTCTTTAATATCTCAAAATATCAGGATGATTCCGATTGGTCACCTGCCGCTGCAACCTGGTATGGAAGTCCTAACGGCGCTGGAAGTGATGGTGCTTGTGGATATGGGAATGGTGTAGGGCAGTCACCATTCAACTCAATGGTTTCAGCTGGAAGGCCGTCGCTATACAAATCAGGGAAAGAATGTGGAGCTTGTTATGAGGTAAAGTGCACAGAAAATGCAGCTTGCTCCGGCAATCCGGTGACTGTGGTTATCACTGATAGTTGCCCTGGGTGTGATCCTAGCTCCATACACTTTGACTTGAGCGCGTTCGGAGCCATGGCTAGCACTGGCCAGGTTGATCAACTCCGTGATGCGGGTGTTCTGCAAATTCAGCACAGAAGAGTGGACTGCAACTATCCAGGCAAGGCTCTTACGTTCCGGGTTGATACTGGGTCCAACCTAAACTATTTGGCCGCCCTCGTCGAGTATGACGGTGGAGATGGAGACCTCGCATCAGTAGAGCTGAAACAAGCAGCACTAAAAGCTCCCTTCTCTATCCGCCTCACCGAGCTTGAATCCGGCAAGACCATTGTAGCTAACAATGTTATTCTTCAAGATTGGAGTCCTGGTCAAGTTTACAGATCCAGCATTCAATTTTAG 729 48.42 MAPFYSVFFTILLPLSSLFLNPCFCFHPKLFNISKYQDDSDWSPAAATWYGSPNGAGSDGACGYGNGVGQSPFNSMVSAGRPSLYKSGKECGACYEVKCTENAACSGNPVTVVITDSCPGCDPSSIHFDLSAFGAMASTGQVDQLRDAGVLQIQHRRVDCNYPGKALTFRVDTGSNLNYLAALVEYDGGDGDLASVELKQAALKAPFSIRLTELESGKTIVANNVILQDWSPGQVYRSSIQF 242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 6698060 6699893 - Conep18aG0095500.1 Cone18ag0928 457889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone18ag0928 242 PRINTS Expansin/Lol pI family signature 81 99 IPR007118 GO:0005576(InterPro)
Cone18ag0928 242 PRINTS Expansin/Lol pI family signature 148 164 IPR007118 GO:0005576(InterPro)
Cone18ag0928 242 PRINTS Expansin/Lol pI family signature 41 56 IPR007118 GO:0005576(InterPro)
Cone18ag0928 242 PANTHER EXPANSIN-B3 20 242 - -
Cone18ag0928 242 SMART dpbb_1 77 155 IPR007112 -
Cone18ag0928 242 Pfam Expansin C-terminal domain 168 201 IPR007117 -
Cone18ag0928 242 Pfam Lytic transglycolase 78 154 IPR009009 -
Cone18ag0928 242 Gene3D - 161 202 IPR036749 -
Cone18ag0928 242 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 59 165 IPR007112 -
Cone18ag0928 242 CDD DPBB_EXPB_N 42 160 - -
Cone18ag0928 242 PRINTS Major pollen allergen Lol pI signature 79 90 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Cone18ag0928 242 PRINTS Major pollen allergen Lol pI signature 137 152 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Cone18ag0928 242 PRINTS Major pollen allergen Lol pI signature 169 184 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Cone18ag0928 242 PRINTS Major pollen allergen Lol pI signature 99 109 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Cone18ag0928 242 PRINTS Major pollen allergen Lol pI signature 185 200 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Cone18ag0928 242 SUPERFAMILY PHL pollen allergen 166 238 IPR036749 -
Cone18ag0928 242 SUPERFAMILY Barwin-like endoglucanases 39 164 IPR036908 -
Cone18ag0928 242 Gene3D - 203 242 IPR036749 -
Cone18ag0928 242 Gene3D - 30 160 IPR036908 -
Cone18ag0928 242 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 178 238 IPR007117 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone18ag0928 Cone-Chr18:6698060 Cone3ag1410 Cone-Chr3:32948120 1.38E-60 dispersed
Cone11ag0575 Cone-Chr11:3310570 Cone18ag0928 Cone-Chr18:6698060 5.89E-154 wgd
Cone14ag0518 Cone-Chr14:2595107 Cone18ag0928 Cone-Chr18:6698060 7.74E-96 wgd
Cone15ag0545 Cone-Chr15:2711301 Cone18ag0928 Cone-Chr18:6698060 1.60E-97 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone18ag0928 - - - 0.0