Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone18ag0952 ATGGGGGAGAAAGATGATGAGTTGGGGTTGGGATTGAGTTTGAGGTTGGGATGGGGAGGCGAAACGAGGTCGTTTGAGCCTTCGTTGCAGTTGGGTAATGATCTTATGCGGAGGCCTTCACAGCAGCATCCCATGCAGACGCTCAATCCTCACCACCGGATCACATCTTGGAATGAACTGATCTTTCACTCGTCCGTTACTACTAATAGAAACAACTGTCCGGCTGAAACGAGTTCGTTCTTAGGAATCAACGTGAATAGGACTCCAGTAGTAGTAGTAGATGTTGACCAGGAAGACCAGAAAAACGGCGCCGGTTCGTCGCCGAATAGCACGGTCTCGAGCATTAGCGGGAAGAGGAGTGAGAGAGAGGCGGGGGCGGGTGGTTGTGGGGAGGAGATGGAGGCGGAGCGGGCTTCCTGCTCGCGAGGGAGTGATGACGAGGACGGAGGCGGTGGCGCCGACGGAGATGAAGCAGGGAGGAAGAAGCTGAGGTTGTCTAAGGATCAAGCTTTGGTGCTTGAAGAGACTTTCAAAGAGCACAACACTCTTAATCCGAAAGAAAAGCTGGCACTGGCTAAGCAGTTGAATCTGAGGCCTAGGCAAGTGGAAGTCTGGTTCCAAAATAGGAGGGCAAGGACCAAGTTGAAGCAAACAGAGGTGGACTGTGAGTACTTGAAACGATGCTCTGAGAATCTAACGCAGGAGAATAGGAGGTTGCAGAAGGAGGTACATGAGCTTAGAGCACTCAAACTTTCCCCACTGTTTTACATGCACATGAACCCTCCTACTACCCTCACTATGTGTCCCCATTGTGAACGCGTTACCTCCTCCTCCACTTCCCCTGGCGCCGCCGCCGCTGTTGCTGCTTCCGACCCCGCTCCTGCTCCGGCCAAATCAAATCTTCAGCACCCACTTCCGATCAATCTATGGGCCACCACACCAATCCAACGTTGA 954 52.83 MGEKDDELGLGLSLRLGWGGETRSFEPSLQLGNDLMRRPSQQHPMQTLNPHHRITSWNELIFHSSVTTNRNNCPAETSSFLGINVNRTPVVVVDVDQEDQKNGAGSSPNSTVSSISGKRSEREAGAGGCGEEMEAERASCSRGSDDEDGGGGADGDEAGRKKLRLSKDQALVLEETFKEHNTLNPKEKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCSENLTQENRRLQKEVHELRALKLSPLFYMHMNPPTTLTMCPHCERVTSSSTSPGAAAAVAASDPAPAPAKSNLQHPLPINLWATTPIQR 317
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 6943238 6944747 - Conep18aG0097900.1 Cone18ag0952 457913
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone18ag0952 317 ProSiteProfiles 'Homeobox' domain profile. 156 216 IPR001356 GO:0003677(InterPro)
Cone18ag0952 317 SMART HOX_1 158 220 IPR001356 GO:0003677(InterPro)
Cone18ag0952 317 Coils Coil 222 249 - -
Cone18ag0952 317 SUPERFAMILY Homeodomain-like 148 217 IPR009057 -
Cone18ag0952 317 MobiDBLite consensus disorder prediction 124 162 - -
Cone18ag0952 317 Pfam Homeobox associated leucine zipper 216 250 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone18ag0952 317 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 28 288 IPR050762 -
Cone18ag0952 317 MobiDBLite consensus disorder prediction 100 118 - -
Cone18ag0952 317 Gene3D - 164 214 - -
Cone18ag0952 317 SMART halz 216 259 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone18ag0952 317 MobiDBLite consensus disorder prediction 98 162 - -
Cone18ag0952 317 Pfam HD-ZIP protein N terminus 1 123 IPR006712 GO:0005634(InterPro)
Cone18ag0952 317 CDD homeodomain 160 217 IPR001356 GO:0003677(InterPro)
Cone18ag0952 317 ProSitePatterns 'Homeobox' domain signature. 191 214 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cone18ag0952 317 Pfam Homeodomain 160 214 IPR001356 GO:0003677(InterPro)
Cone18ag0952 317 FunFam Homeobox-leucine zipper protein HAT22 164 210 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone18ag0952 Cone-Chr18:6943238 Cone6ag0654 Cone-Chr6:3299663 2.01E-73 dispersed
Cone11ag0552 Cone-Chr11:3091504 Cone18ag0952 Cone-Chr18:6943238 3.99E-166 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45203 PF04263 TPK_catalytic 2.60E-39 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone18ag0952 K09338 - rcu:8265803 282.722