Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone18ag0985 ATGGGGAAGAAAGGATCATTGGGCAGTAGCACTTCATGGCTAACTGCTGTTAAAAGAGCTTTCAGATCTCCTACTAAAGACGATGATGAGAAGAAGAGGGAGAAGAGGAGGTGGATATTCAGAAAACCAGCAAATCATTCTGAACCGGTGTCGTCCAGTCATACAACAACAGCTACAACAAAATTAAAAGAGGAGCAGAAACATGCTCTCGCCGTGGCGGTTGCCACCGCCGAGGCAGCAATAGCCACCGCTCAGGCCGCCGTGGAGGTGGCCAGGCTCACCAGGCCGTCTAACCACGCTAGAGAGCAACACTCCGCCATTATCATTCAAACTGCTTTTAGAGGATACCTGGCAAGGAGAGCACTAAGAGCACTAAAAGGGTTGGTCAAATTGCAAGCATTAGTGAGAGGACACAATGTGAGAAAGCAAGCAAAGATGACACTTAGATGTATGCAAGCTCTGGTTAGGGTTCAGTCTAGAGTCCTTGATCATAGGATGAGGCTGTCTCATGAAGGAAGTAGGAAATCTACTTTTAGTGACACTAATAGTATTCTTCAAGACATCTCAGACCGAAAATCGATCTCTCAATCAAGAGAAGGAAGTAGTGTTGCAGATGATTGGGATGAGAGGCCTCACACTATTGAAGAAGTTAAAGCCATGTTGCAGCATCGAAAAGAGGCAGCCATTAAGCGTGACAGAACCTTATCTCATGCCTTTTCTCAACAGATATGGAGGAATAGGAACTCATCAATAGGCAATGAAGACGAGCTTGGAGAGAGACCCAGGAGGCTTGATCAATTGATGACAAAGAAACCATGGGAGAACAGAGGAAGAGCTTCAACCGATCAAAGAGACCCCATCAAAACCGTTGAAATGGACACTTCTCAACCTTATTCATACTTAGCTACAAATTCTCATAGAATGACCCAACAACAACAAAGAATAAACCCACATCCTGTTTCTTCTTCTCCGCTACACCGAGCCCACCATCACCCTCCTTCAATCTCACCGTCCCCTTCCAAAGCCCGACCCATACAAATCCGATCCGCTAGCCCATGTTGTGGTAGAGAAGATAGGACCTTTCATACATCTCAAACACCAAGTTTAAGGTCAAATTATTACTATAGTGGTAATAGTCAACCTCACGGCAGAAATGGTGGAACCAGTAGTAGTAGTACTACTACTACAATAAGTACTCATAATGGTTCTTCTGCATTGCCTAATTACATGGCTGCCACTGAGTCAGCCAAGGCACGAGTCCGGTCTCAGAGTGCACCGAGACAGAGACCGGCTACACCGGAGAGAGACCGACCCGGGTCCGCAAGAAAAAGGCTTTCTTTTCCGGTCCCACCGGATAATTATGGCGGAGGGATCAGCTATGGAGGTTGTTATGGGAATAATTTGAGGAGTCCAAGCTTTAAGAGTGTTAGTGGAGTCGTAGTCGGAGAAGGAGGGCATTATGGACATTATGGACATTATGGTGGTGTAGAGCAACAGTCTAATTACTCTTCTTGCTGTACTGAAAGTCTTGGTGGTGAGATTTCTCCTTCTTCAACTAGTGATCTTAGAAGGTGGTTGAGGTGA 1584 45.83 MGKKGSLGSSTSWLTAVKRAFRSPTKDDDEKKREKRRWIFRKPANHSEPVSSSHTTTATTKLKEEQKHALAVAVATAEAAIATAQAAVEVARLTRPSNHAREQHSAIIIQTAFRGYLARRALRALKGLVKLQALVRGHNVRKQAKMTLRCMQALVRVQSRVLDHRMRLSHEGSRKSTFSDTNSILQDISDRKSISQSREGSSVADDWDERPHTIEEVKAMLQHRKEAAIKRDRTLSHAFSQQIWRNRNSSIGNEDELGERPRRLDQLMTKKPWENRGRASTDQRDPIKTVEMDTSQPYSYLATNSHRMTQQQQRINPHPVSSSPLHRAHHHPPSISPSPSKARPIQIRSASPCCGREDRTFHTSQTPSLRSNYYYSGNSQPHGRNGGTSSSSTTTTISTHNGSSALPNYMAATESAKARVRSQSAPRQRPATPERDRPGSARKRLSFPVPPDNYGGGISYGGCYGNNLRSPSFKSVSGVVVGEGGHYGHYGHYGGVEQQSNYSSCCTESLGGEISPSSTSDLRRWLR 527
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 7248465 7250854 + Conep18aG0101300.1 Cone18ag0985 457946

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone18ag0985 527 MobiDBLite consensus disorder prediction 21 36 - -
Cone18ag0985 527 MobiDBLite consensus disorder prediction 18 63 - -
Cone18ag0985 527 MobiDBLite consensus disorder prediction 189 211 - -
Cone18ag0985 527 MobiDBLite consensus disorder prediction 306 451 - -
Cone18ag0985 527 ProSiteProfiles IQ motif profile. 126 153 - -
Cone18ag0985 527 MobiDBLite consensus disorder prediction 251 294 - -
Cone18ag0985 527 Pfam Protein of unknown function (DUF4005) 351 461 IPR025064 -
Cone18ag0985 527 MobiDBLite consensus disorder prediction 358 410 - -
Cone18ag0985 527 Pfam IQ calmodulin-binding motif 129 145 IPR000048 GO:0005515(InterPro)
Cone18ag0985 527 Pfam IQ calmodulin-binding motif 104 123 IPR000048 GO:0005515(InterPro)
Cone18ag0985 527 Gene3D - 99 155 - -
Cone18ag0985 527 ProSiteProfiles IQ motif profile. 102 130 - -
Cone18ag0985 527 FunFam IQ-domain 11 101 152 - -
Cone18ag0985 527 SMART iq_5 101 123 IPR000048 GO:0005515(InterPro)
Cone18ag0985 527 SMART iq_5 124 145 IPR000048 GO:0005515(InterPro)
Cone18ag0985 527 MobiDBLite consensus disorder prediction 252 289 - -
Cone18ag0985 527 PANTHER IQ-DOMAIN 5-RELATED 13 440 - -
Cone18ag0985 527 MobiDBLite consensus disorder prediction 306 320 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone18ag0985 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0010 Cone-Chr14:61618 Cone18ag0985 Cone-Chr18:7248465 1.45E-19 dispersed
Cone18ag0985 Cone-Chr18:7248465 Cone20ag0275 Cone-Chr20:1221713 3.10E-19 dispersed
Cone11ag0521 Cone-Chr11:2740499 Cone18ag0985 Cone-Chr18:7248465 2.38E-287 wgd
Cone18ag0985 Cone-Chr18:7248465 Cone5ag0723 Cone-Chr5:3115307 3.52E-25 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi15g624 . . . . . . Bma04g00927 . . Cmo17g00478 . . . . . . . . . . . . . . . . . . . . . . . Cone11ag0521 Cone18ag0985 . . . . . . . . . Bpe04g00965 . . . . . . Cma17g00507 . Car17g00469 . Cpe12g00436 . . . . . . . Cla06g00255 Cam06g0278 Cec06g0277 Cco06g0276 Clacu06g0268 Cmu06g0268 Cre06g1039 . . . Cme11g02263
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone5ag0328 . 91 268 IQD Protein Family AT3G09710 53.7 1.9e-48 191.0
Cone18ag0502 . 1 459 IQD Protein Family AT3G52290 53.2 6.7e-93 338.6
Cone5ag0328 . 73 293 IQD Protein Family AT2G26410 52.0 6.2e-48 189.5
Cone18ag0162 . 1 392 IQD Protein Family AT3G22190 59.9 3.4e-97 352.8
Cone11ag1428 . 1 385 IQD Protein Family AT3G22190 59.1 7.3e-92 335.1
Cone1ag0388 . 1 397 IQD Protein Family AT3G22190 53.0 1.4e-90 330.9
Cone5ag1312 . 1 397 IQD Protein Family AT3G22190 51.6 2.3e-85 313.5
Cone4ag1669 . 2 415 IQD Protein Family AT2G26180 57.2 2.9e-101 366.3
Cone20ag0275 . 4 391 IQD Protein Family AT2G26180 58.8 2.5e-100 363.2
Cone17ag0933 . 4 391 IQD Protein Family AT2G26180 57.0 7.5e-97 351.7
Cone14ag1038 . 44 231 IQD Protein Family AT2G33990 54.5 1.3e-43 174.1
Cone14ag1038 . 19 228 IQD Protein Family AT3G15050 55.2 2.3e-51 199.9
Cone15ag1024 . 36 229 IQD Protein Family AT3G15050 56.2 5.0e-51 198.7
Cone18ag0985 . 1 527 IQD Protein Family AT4G00820 50.4 4.6e-115 412.5
Cone4ag0762 . 1 383 IQD Protein Family AT3G16490 50.3 3.0e-63 240.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002938 1 3 2 3 3 1 2 1 1 1 1 1 2 2 2 2 1 3 2 2 2 2 2 2 2 1 1 1 2 3 54