Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone18ag0987 ATGCAGACGCCGGCGACGAGGACACGTGTCGGAAAGTACGAGCTCGGTAGAACCTTGGGTGAAGGTAGCTTTGCCAAGGTCAAGTTCGCTAAGAATGTGGAGACCGGAGAATACGTCGCCATCAAGATTCTCGACCGTGAACAAGTCCTCCGCCACAAGATGGTTGAGCAGATTAAAAGAGAAATATCAACTATGAAGCTCATCAAGCATCCAAATGTTATTAAAATTTTTGAGGTGATGGCTAGCAAAACAAGAATCTATATTGTTCTCGAATTTGTGGATGGAGGCGAGCTCTTTGACAGAATAGCCAATACTGGGAGACTTAAGGAGGATGAAGCAAGGAGATATTTCCATCAGCTCATTAATGCCGTGGATTATTGCCATAGTAGAGGCGTGTATCATAGAGATTTGAAGCCTGAAAATCTTCTTCTGGATGCATATGGTGTTCTTAAAATTTCGGATTTTGGATTGAGTGCATTCTCACAGCAAGGTGATGGTCTGCTTCATACTGCTTGTGGGACCCCAAATTATGTTGCTCCTGAGGTTCTTAATGACAAAGGTTATGATGGTACATCATCAGATATATGGTCTTGTGGGGTCATTCTCTTTGTTCTTATGGCAGGATTCTTGCCTTTTGATGAGCCAAACCTTATAGGTTTATATAAAAAAATTTGCAGGGCGGAGTTTTCATGCCCCTCATGGTTTTCATCTGGTGCAAAGAAACTGATTAAGCGGATTCTTGATCCAAACCCTCTTAGGCGTATAATGGTGTCTGAAATTCTAGAAGATGAATGGTTCAAGAAAGATTACCAGCCTGCTCAGGAATCAGAAGAGGATGTAACGCTCGATGATATAGATGCTGTTTTTAATGACTCAAAGGAAAATCTTGTGACAGAGAGAAAAGAGAAACCTGTGTCCATGAATGCTTTTGAGCTTATTTCTAGGTCGTCAGGATTCAGTCTTGAAAGTTTATTTGAGAAGCAGAAGGGGAGTGTGAAGCGAGAAACCCGTTTTGCTTCCCAATGCCCCGCAAATGAGATAATGGCTAAGATTGAGGAAACTGCGAAGCCTATGGGATTTAATGTTAGAAAGCGGAACTACAAGATGAAATTACAAGGTGACAAGACAGGAAGGAAAGGACACCTCTCCGTAGCAACTGAGGTATTTGAGGTGGCTCCTTCCGTTCACATGGTGGAGCTTAGGAAAACAGGTGGTGACACGCTCGAGTTTCACAAGTTTTACAGAAGTTTTTCATCAGGATTGAAGGATATAATTTGGGAAACCGACGAAAAAACCGGAGAAAGCTCATAG 1311 42.41 MQTPATRTRVGKYELGRTLGEGSFAKVKFAKNVETGEYVAIKILDREQVLRHKMVEQIKREISTMKLIKHPNVIKIFEVMASKTRIYIVLEFVDGGELFDRIANTGRLKEDEARRYFHQLINAVDYCHSRGVYHRDLKPENLLLDAYGVLKISDFGLSAFSQQGDGLLHTACGTPNYVAPEVLNDKGYDGTSSDIWSCGVILFVLMAGFLPFDEPNLIGLYKKICRAEFSCPSWFSSGAKKLIKRILDPNPLRRIMVSEILEDEWFKKDYQPAQESEEDVTLDDIDAVFNDSKENLVTERKEKPVSMNAFELISRSSGFSLESLFEKQKGSVKRETRFASQCPANEIMAKIEETAKPMGFNVRKRNYKMKLQGDKTGRKGHLSVATEVFEVAPSVHMVELRKTGGDTLEFHKFYRSFSSGLKDIIWETDEKTGESS 436
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 7258528 7262256 - Conep18aG0101500.1 Cone18ag0987 457948
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone18ag0987 436 FunFam Non-specific serine/threonine protein kinase 4 92 - -
Cone18ag0987 436 SUPERFAMILY Protein kinase-like (PK-like) 10 278 IPR011009 -
Cone18ag0987 436 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone18ag0987 436 Pfam NAF domain 304 364 IPR004041 GO:0007165(InterPro)
Cone18ag0987 436 FunFam Non-specific serine/threonine protein kinase 6 305 - -
Cone18ag0987 436 Gene3D Transferase(Phosphotransferase) domain 1 93 292 - -
Cone18ag0987 436 Gene3D Kinase associated domain 1, KA1 301 427 - -
Cone18ag0987 436 SMART serkin_6 13 266 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone18ag0987 436 ProSiteProfiles NAF domain profile. 302 326 IPR018451 GO:0007165(InterPro)
Cone18ag0987 436 ProSiteProfiles Protein kinase domain profile. 13 266 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone18ag0987 436 Pfam Protein kinase domain 13 266 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone18ag0987 436 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 8 411 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Cone18ag0987 436 ProSitePatterns Protein kinases ATP-binding region signature. 19 42 IPR017441 GO:0005524(InterPro)
Cone18ag0987 436 CDD CIPK_C 308 423 - -
Cone18ag0987 436 Gene3D Phosphorylase Kinase; domain 1 3 92 - -
Cone18ag0987 436 CDD STKc_SnRK3 12 265 - -
Cone18ag0987 436 FunFam Non-specific serine/threonine protein kinase 301 427 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone18ag0987 Cone-Chr18:7258528 Cone5ag1568 Cone-Chr5:10936351 1.72E-218 dispersed
Cone18ag0987 Cone-Chr18:7258528 Cone6ag1118 Cone-Chr6:7140717 1.02E-227 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82334 None None None None Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone18ag0987 - - - 0.0